Lindahl E - Search Results

1

Computational Studies of SARS-CoV-2 3CLpro: Insights from MD Simulations.

Grottesi A, Bešker N, Emerson A, Manelfi C, Beccari AR, Frigerio F, Lindahl E, Cerchia C, Talarico C. Grottesi A, et al. Among authors: lindahl e. Int J Mol Sci. 2020 Jul 28;21(15):5346. doi: 10.3390/ijms21155346. Int J Mol Sci. 2020. PMID: 32731361 Free PMC article.

2

Molecular dynamics simulations.

Lindahl ER. Lindahl ER. Methods Mol Biol. 2008;443:3-23. doi: 10.1007/978-1-59745-177-2_1. Methods Mol Biol. 2008. PMID: 18446279

3

A Blueprint for High Affinity SARS-CoV-2 Mpro Inhibitors from Activity-Based Compound Library Screening Guided by Analysis of Protein Dynamics.

Gossen J, Albani S, Hanke A, Joseph BP, Bergh C, Kuzikov M, Costanzi E, Manelfi C, Storici P, Gribbon P, Beccari AR, Talarico C, Spyrakis F, Lindahl E, Zaliani A, Carloni P, Wade RC, Musiani F, Kokh DB, Rossetti G. Gossen J, et al. Among authors: lindahl e. ACS Pharmacol Transl Sci. 2021 Mar 16;4(3):1079-1095. doi: 10.1021/acsptsci.0c00215. eCollection 2021 Jun 11. ACS Pharmacol Transl Sci. 2021. PMID: 34136757 Free PMC article.

4

An emerging consensus on voltage-dependent gating from computational modeling and molecular dynamics simulations.

Vargas E, Yarov-Yarovoy V, Khalili-Araghi F, Catterall WA, Klein ML, Tarek M, Lindahl E, Schulten K, Perozo E, Bezanilla F, Roux B. Vargas E, et al. Among authors: lindahl e. J Gen Physiol. 2012 Dec;140(6):587-94. doi: 10.1085/jgp.201210873. J Gen Physiol. 2012. PMID: 23183694 Free PMC article.

5

GROMACS 4.5: a high-throughput and highly parallel open source molecular simulation toolkit.

Pronk S, Páll S, Schulz R, Larsson P, Bjelkmar P, Apostolov R, Shirts MR, Smith JC, Kasson PM, van der Spoel D, Hess B, Lindahl E. Pronk S, et al. Among authors: lindahl e. Bioinformatics. 2013 Apr 1;29(7):845-54. doi: 10.1093/bioinformatics/btt055. Epub 2013 Feb 13. Bioinformatics. 2013. PMID: 23407358 Free PMC article.

6

Molecular dynamics simulations.

Lindahl E. Lindahl E. Methods Mol Biol. 2015;1215:3-26. doi: 10.1007/978-1-4939-1465-4_1. Methods Mol Biol. 2015. PMID: 25330956

7

eBDIMS server: protein transition pathways with ensemble analysis in 2D-motion spaces.

Orellana L, Gustavsson J, Bergh C, Yoluk O, Lindahl E. Orellana L, et al. Among authors: lindahl e. Bioinformatics. 2019 Sep 15;35(18):3505-3507. doi: 10.1093/bioinformatics/btz104. Bioinformatics. 2019. PMID: 30838394 Free PMC article.

8

Probing effects of the SARS-CoV-2 E protein on membrane curvature and intracellular calcium.

Mehregan A, Pérez-Conesa S, Zhuang Y, Elbahnsi A, Pasini D, Lindahl E, Howard RJ, Ulens C, Delemotte L. Mehregan A, et al. Among authors: lindahl e. Biochim Biophys Acta Biomembr. 2022 Oct 1;1864(10):183994. doi: 10.1016/j.bbamem.2022.183994. Epub 2022 Jun 18. Biochim Biophys Acta Biomembr. 2022. PMID: 35724739 Free PMC article.

9

Model quality assessment for membrane proteins.

Ray A, Lindahl E, Wallner B. Ray A, et al. Among authors: lindahl e. Bioinformatics. 2010 Dec 15;26(24):3067-74. doi: 10.1093/bioinformatics/btq581. Epub 2010 Oct 14. Bioinformatics. 2010. PMID: 20947525

10

Stabilization of the GluCl ligand-gated ion channel in the presence and absence of ivermectin.

Yoluk O, Brömstrup T, Bertaccini EJ, Trudell JR, Lindahl E. Yoluk O, et al. Among authors: lindahl e. Biophys J. 2013 Aug 6;105(3):640-7. doi: 10.1016/j.bpj.2013.06.037. Biophys J. 2013. PMID: 23931312 Free PMC article.

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