Liu Q - Search Results

1

Dual indexed library design enables compatibility of in-Drop single-cell RNA-sequencing with exAMP chemistry sequencing platforms.

Southard-Smith AN, Simmons AJ, Chen B, Jones AL, Ramirez Solano MA, Vega PN, Scurrah CR, Zhao Y, Brenan MJ, Xuan J, Shrubsole MJ, Porter EB, Chen X, Brenan CJH, Liu Q, Quigley LNM, Lau KS. Southard-Smith AN, et al. Among authors: liu q. BMC Genomics. 2020 Jul 2;21(1):456. doi: 10.1186/s12864-020-06843-0. BMC Genomics. 2020. PMID: 32616006 Free PMC article.

2

Identification of active miRNA promoters from nuclear run-on RNA sequencing.

Liu Q, Wang J, Zhao Y, Li CI, Stengel KR, Acharya P, Johnston G, Hiebert SW, Shyr Y. Liu Q, et al. Nucleic Acids Res. 2017 Jul 27;45(13):e121. doi: 10.1093/nar/gkx318. Nucleic Acids Res. 2017. PMID: 28460090 Free PMC article.

3

Unsupervised Trajectory Analysis of Single-Cell RNA-Seq and Imaging Data Reveals Alternative Tuft Cell Origins in the Gut.

Herring CA, Banerjee A, McKinley ET, Simmons AJ, Ping J, Roland JT, Franklin JL, Liu Q, Gerdes MJ, Coffey RJ, Lau KS. Herring CA, et al. Among authors: liu q. Cell Syst. 2018 Jan 24;6(1):37-51.e9. doi: 10.1016/j.cels.2017.10.012. Epub 2017 Nov 15. Cell Syst. 2018. PMID: 29153838 Free PMC article.

4

Nascent RNA sequencing analysis provides insights into enhancer-mediated gene regulation.

Wang J, Zhao Y, Zhou X, Hiebert SW, Liu Q, Shyr Y. Wang J, et al. Among authors: liu q. BMC Genomics. 2018 Aug 23;19(1):633. doi: 10.1186/s12864-018-5016-z. BMC Genomics. 2018. PMID: 30139328 Free PMC article.

5

Quantitative assessment of cell population diversity in single-cell landscapes.

Liu Q, Herring CA, Sheng Q, Ping J, Simmons AJ, Chen B, Banerjee A, Li W, Gu G, Coffey RJ, Shyr Y, Lau KS. Liu Q, et al. PLoS Biol. 2018 Oct 22;16(10):e2006687. doi: 10.1371/journal.pbio.2006687. eCollection 2018 Oct. PLoS Biol. 2018. PMID: 30346945 Free PMC article.

6

The CDK7 inhibitor THZ1 alters RNA polymerase dynamics at the 5' and 3' ends of genes.

Sampathi S, Acharya P, Zhao Y, Wang J, Stengel KR, Liu Q, Savona MR, Hiebert SW. Sampathi S, et al. Among authors: liu q. Nucleic Acids Res. 2019 May 7;47(8):3921-3936. doi: 10.1093/nar/gkz127. Nucleic Acids Res. 2019. PMID: 30805632 Free PMC article.

7

scRNABatchQC: multi-samples quality control for single cell RNA-seq data.

Liu Q, Sheng Q, Ping J, Ramirez MA, Lau KS, Coffey RJ, Shyr Y. Liu Q, et al. Bioinformatics. 2019 Dec 15;35(24):5306-5308. doi: 10.1093/bioinformatics/btz601. Bioinformatics. 2019. PMID: 31373345 Free PMC article.

8

ProGeo-neo: a customized proteogenomic workflow for neoantigen prediction and selection.

Li Y, Wang G, Tan X, Ouyang J, Zhang M, Song X, Liu Q, Leng Q, Chen L, Xie L. Li Y, et al. Among authors: liu q. BMC Med Genomics. 2020 Apr 3;13(Suppl 5):52. doi: 10.1186/s12920-020-0683-4. BMC Med Genomics. 2020. PMID: 32241270 Free PMC article.

9

The Human Tumor Atlas Network: Charting Tumor Transitions across Space and Time at Single-Cell Resolution.

Rozenblatt-Rosen O, Regev A, Oberdoerffer P, Nawy T, Hupalowska A, Rood JE, Ashenberg O, Cerami E, Coffey RJ, Demir E, Ding L, Esplin ED, Ford JM, Goecks J, Ghosh S, Gray JW, Guinney J, Hanlon SE, Hughes SK, Hwang ES, Iacobuzio-Donahue CA, Jané-Valbuena J, Johnson BE, Lau KS, Lively T, Mazzilli SA, Pe'er D, Santagata S, Shalek AK, Schapiro D, Snyder MP, Sorger PK, Spira AE, Srivastava S, Tan K, West RB, Williams EH; Human Tumor Atlas Network. Rozenblatt-Rosen O, et al. Cell. 2020 Apr 16;181(2):236-249. doi: 10.1016/j.cell.2020.03.053. Cell. 2020. PMID: 32302568 Free PMC article. Review.

10

Succinate Produced by Intestinal Microbes Promotes Specification of Tuft Cells to Suppress Ileal Inflammation.

Banerjee A, Herring CA, Chen B, Kim H, Simmons AJ, Southard-Smith AN, Allaman MM, White JR, Macedonia MC, Mckinley ET, Ramirez-Solano MA, Scoville EA, Liu Q, Wilson KT, Coffey RJ, Washington MK, Goettel JA, Lau KS. Banerjee A, et al. Among authors: liu q. Gastroenterology. 2020 Dec;159(6):2101-2115.e5. doi: 10.1053/j.gastro.2020.08.029. Epub 2020 Aug 21. Gastroenterology. 2020. PMID: 32828819 Free PMC article.

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