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Page 1
Origin of microbial biomineralization and magnetotaxis during the Archean.
Lin W, Paterson GA, Zhu Q, Wang Y, Kopylova E, Li Y, Knight R, Bazylinski DA, Zhu R, Kirschvink JL, Pan Y. Lin W, et al. Among authors: kopylova e. Proc Natl Acad Sci U S A. 2017 Feb 28;114(9):2171-2176. doi: 10.1073/pnas.1614654114. Epub 2017 Feb 13. Proc Natl Acad Sci U S A. 2017. PMID: 28193877 Free PMC article.
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns.
Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech Xu Z, Kightley EP, Thompson LR, Hyde ER, Gonzalez A, Knight R. Amir A, et al. Among authors: kopylova e. mSystems. 2017 Mar 7;2(2):e00191-16. doi: 10.1128/mSystems.00191-16. eCollection 2017 Mar-Apr. mSystems. 2017. PMID: 28289731 Free PMC article.
Reply to Wang and Chen: An ancient origin of magnetotactic bacteria.
Lin W, Paterson GA, Zhu Q, Wang Y, Kopylova E, Li Y, Knight R, Bazylinski DA, Zhu R, Kirschvink JL, Pan Y. Lin W, et al. Among authors: kopylova e. Proc Natl Acad Sci U S A. 2017 Jun 27;114(26):E5019-E5020. doi: 10.1073/pnas.1707301114. Epub 2017 Jun 12. Proc Natl Acad Sci U S A. 2017. PMID: 28607095 Free PMC article. No abstract available.
A communal catalogue reveals Earth's multiscale microbial diversity.
Thompson LR, Sanders JG, McDonald D, Amir A, Ladau J, Locey KJ, Prill RJ, Tripathi A, Gibbons SM, Ackermann G, Navas-Molina JA, Janssen S, Kopylova E, Vázquez-Baeza Y, González A, Morton JT, Mirarab S, Zech Xu Z, Jiang L, Haroon MF, Kanbar J, Zhu Q, Jin Song S, Kosciolek T, Bokulich NA, Lefler J, Brislawn CJ, Humphrey G, Owens SM, Hampton-Marcell J, Berg-Lyons D, McKenzie V, Fierer N, Fuhrman JA, Clauset A, Stevens RL, Shade A, Pollard KS, Goodwin KD, Jansson JK, Gilbert JA, Knight R; Earth Microbiome Project Consortium. Thompson LR, et al. Among authors: kopylova e. Nature. 2017 Nov 23;551(7681):457-463. doi: 10.1038/nature24621. Epub 2017 Nov 1. Nature. 2017. PMID: 29088705 Free PMC article.
American Gut: an Open Platform for Citizen Science Microbiome Research.
McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium; Knight R. McDonald D, et al. mSystems. 2018 May 15;3(3):e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun. mSystems. 2018. PMID: 29795809 Free PMC article.
Phylogenomics of 10,575 genomes reveals evolutionary proximity between domains Bacteria and Archaea.
Zhu Q, Mai U, Pfeiffer W, Janssen S, Asnicar F, Sanders JG, Belda-Ferre P, Al-Ghalith GA, Kopylova E, McDonald D, Kosciolek T, Yin JB, Huang S, Salam N, Jiao JY, Wu Z, Xu ZZ, Cantrell K, Yang Y, Sayyari E, Rabiee M, Morton JT, Podell S, Knights D, Li WJ, Huttenhower C, Segata N, Smarr L, Mirarab S, Knight R. Zhu Q, et al. Among authors: kopylova e. Nat Commun. 2019 Dec 2;10(1):5477. doi: 10.1038/s41467-019-13443-4. Nat Commun. 2019. PMID: 31792218 Free PMC article.
Microbiome analyses of blood and tissues suggest cancer diagnostic approach.
Poore GD, Kopylova E, Zhu Q, Carpenter C, Fraraccio S, Wandro S, Kosciolek T, Janssen S, Metcalf J, Song SJ, Kanbar J, Miller-Montgomery S, Heaton R, Mckay R, Patel SP, Swafford AD, Knight R. Poore GD, et al. Among authors: kopylova e. Nature. 2020 Mar;579(7800):567-574. doi: 10.1038/s41586-020-2095-1. Epub 2020 Mar 11. Nature. 2020. Retraction in: Nature. 2024 Jul;631(8021):694. doi: 10.1038/s41586-024-07656-x PMID: 32214244 Free PMC article. Retracted.
Robustness of cancer microbiome signals over a broad range of methodological variation.
Sepich-Poore GD, McDonald D, Kopylova E, Guccione C, Zhu Q, Austin G, Carpenter C, Fraraccio S, Wandro S, Kosciolek T, Janssen S, Metcalf JL, Song SJ, Kanbar J, Miller-Montgomery S, Heaton R, Mckay R, Patel SP, Swafford AD, Korem T, Knight R. Sepich-Poore GD, et al. Among authors: kopylova e. Oncogene. 2024 Apr;43(15):1127-1148. doi: 10.1038/s41388-024-02974-w. Epub 2024 Feb 23. Oncogene. 2024. PMID: 38396294 Free PMC article.
28 results