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Whole genome assembly from 454 sequencing output via modified DNA graph concept.
Blazewicz J, Bryja M, Figlerowicz M, Gawron P, Kasprzak M, Kirton E, Platt D, Przybytek J, Swiercz A, Szajkowski L. Blazewicz J, et al. Among authors: swiercz a. Comput Biol Chem. 2009 Jun;33(3):224-30. doi: 10.1016/j.compbiolchem.2009.04.005. Epub 2009 May 3. Comput Biol Chem. 2009. PMID: 19477687
Dealing with repetitions in sequencing by hybridization.
Blazewicz J, Glover F, Kasprzak M, Markiewicz WT, Oğuz C, Rebholz-Schuhmann D, Swiercz A. Blazewicz J, et al. Among authors: swiercz a. Comput Biol Chem. 2006 Oct;30(5):313-20. doi: 10.1016/j.compbiolchem.2006.05.002. Epub 2006 Aug 30. Comput Biol Chem. 2006. PMID: 16945587
GRASShopPER-An algorithm for de novo assembly based on GPU alignments.
Swiercz A, Frohmberg W, Kierzynka M, Wojciechowski P, Zurkowski P, Badura J, Laskowski A, Kasprzak M, Blazewicz J. Swiercz A, et al. PLoS One. 2018 Aug 16;13(8):e0202355. doi: 10.1371/journal.pone.0202355. eCollection 2018. PLoS One. 2018. PMID: 30114279 Free PMC article.
38 results