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The pan-cancer landscape of prognostic germline variants in 10,582 patients.
Chatrath A, Przanowska R, Kiran S, Su Z, Saha S, Wilson B, Tsunematsu T, Ahn JH, Lee KY, Paulsen T, Sobierajska E, Kiran M, Tang X, Li T, Kumar P, Ratan A, Dutta A. Chatrath A, et al. Among authors: ratan a. Genome Med. 2020 Feb 17;12(1):15. doi: 10.1186/s13073-020-0718-7. Genome Med. 2020. PMID: 32066500 Free PMC article.
Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation.
Fang C, Wang Z, Han C, Safgren SL, Helmin KA, Adelman ER, Serafin V, Basso G, Eagen KP, Gaspar-Maia A, Figueroa ME, Singer BD, Ratan A, Ntziachristos P, Zang C. Fang C, et al. Among authors: ratan a. Genome Biol. 2020 Sep 15;21(1):247. doi: 10.1186/s13059-020-02152-7. Genome Biol. 2020. PMID: 32933554 Free PMC article.
Germline Variants That Affect Tumor Progression.
Chatrath A, Ratan A, Dutta A. Chatrath A, et al. Among authors: ratan a. Trends Genet. 2021 May;37(5):433-443. doi: 10.1016/j.tig.2020.10.005. Epub 2020 Nov 14. Trends Genet. 2021. PMID: 33203571 Free PMC article. Review.
Genetic and non-genetic factors affecting the expression of COVID-19-relevant genes in the large airway epithelium.
Kasela S, Ortega VE, Martorella M, Garudadri S, Nguyen J, Ampleford E, Pasanen A, Nerella S, Buschur KL, Barjaktarevic IZ, Barr RG, Bleecker ER, Bowler RP, Comellas AP, Cooper CB, Couper DJ, Criner GJ, Curtis JL, Han MK, Hansel NN, Hoffman EA, Kaner RJ, Krishnan JA, Martinez FJ, McDonald MN, Meyers DA, Paine R 3rd, Peters SP, Castro M, Denlinger LC, Erzurum SC, Fahy JV, Israel E, Jarjour NN, Levy BD, Li X, Moore WC, Wenzel SE, Zein J; NHLBI SubPopulations and InteRmediate Outcome Measures In COPD Study (SPIROMICS); NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium; Langelier C, Woodruff PG, Lappalainen T, Christenson SA. Kasela S, et al. Genome Med. 2021 Apr 21;13(1):66. doi: 10.1186/s13073-021-00866-2. Genome Med. 2021. PMID: 33883027 Free PMC article.
Detecting molecular subtypes from multi-omics datasets using SUMO.
Sienkiewicz K, Chen J, Chatrath A, Lawson JT, Sheffield NC, Zhang L, Ratan A. Sienkiewicz K, et al. Among authors: ratan a. Cell Rep Methods. 2022 Jan 24;2(1):100152. doi: 10.1016/j.crmeth.2021.100152. Epub 2022 Jan 14. Cell Rep Methods. 2022. PMID: 35211690 Free PMC article.
Genomic Variants Among Threatened Acropora Corals.
Kitchen SA, Ratan A, Bedoya-Reina OC, Burhans R, Fogarty ND, Miller W, Baums IB. Kitchen SA, et al. Among authors: ratan a. G3 (Bethesda). 2019 May 7;9(5):1633-1646. doi: 10.1534/g3.119.400125. G3 (Bethesda). 2019. PMID: 30914426 Free PMC article.
122 results