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The nf-core framework for community-curated bioinformatics pipelines.
Ewels PA, Peltzer A, Fillinger S, Patel H, Alneberg J, Wilm A, Garcia MU, Di Tommaso P, Nahnsen S. Ewels PA, et al. Among authors: nahnsen s. Nat Biotechnol. 2020 Mar;38(3):276-278. doi: 10.1038/s41587-020-0439-x. Nat Biotechnol. 2020. PMID: 32055031 No abstract available.
Challenges of big data integration in the life sciences.
Fillinger S, de la Garza L, Peltzer A, Kohlbacher O, Nahnsen S. Fillinger S, et al. Among authors: nahnsen s. Anal Bioanal Chem. 2019 Oct;411(26):6791-6800. doi: 10.1007/s00216-019-02074-9. Epub 2019 Aug 28. Anal Bioanal Chem. 2019. PMID: 31463515 Review.
Ten simple rules for providing effective bioinformatics research support.
Kumuthini J, Chimenti M, Nahnsen S, Peltzer A, Meraba R, McFadyen R, Wells G, Taylor D, Maienschein-Cline M, Li JL, Thimmapuram J, Murthy-Karuturi R, Zass L. Kumuthini J, et al. Among authors: nahnsen s. PLoS Comput Biol. 2020 Mar 26;16(3):e1007531. doi: 10.1371/journal.pcbi.1007531. eCollection 2020 Mar. PLoS Comput Biol. 2020. PMID: 32214318 Free PMC article.
Sustainable data analysis with Snakemake.
Mölder F, Jablonski KP, Letcher B, Hall MB, Tomkins-Tinch CH, Sochat V, Forster J, Lee S, Twardziok SO, Kanitz A, Wilm A, Holtgrewe M, Rahmann S, Nahnsen S, Köster J. Mölder F, et al. Among authors: nahnsen s. F1000Res. 2021 Jan 18;10:33. doi: 10.12688/f1000research.29032.2. eCollection 2021. F1000Res. 2021. PMID: 34035898 Free PMC article.
A data management infrastructure for the integration of imaging and omics data in life sciences.
Kuhn Cuellar L, Friedrich A, Gabernet G, de la Garza L, Fillinger S, Seyboldt A, Koch T, Zur Oven-Krockhaus S, Wanke F, Richter S, Thaiss WM, Horger M, Malek N, Harter K, Bitzer M, Nahnsen S. Kuhn Cuellar L, et al. Among authors: nahnsen s. BMC Bioinformatics. 2022 Feb 7;23(1):61. doi: 10.1186/s12859-022-04584-3. BMC Bioinformatics. 2022. PMID: 35130839 Free PMC article.
63 results