Bekker-Jensen DB - Search Results

1

Rapid and site-specific deep phosphoproteome profiling by data-independent acquisition without the need for spectral libraries.

Bekker-Jensen DB, Bernhardt OM, Hogrebe A, Martinez-Val A, Verbeke L, Gandhi T, Kelstrup CD, Reiter L, Olsen JV. Bekker-Jensen DB, et al. Nat Commun. 2020 Feb 7;11(1):787. doi: 10.1038/s41467-020-14609-1. Nat Commun. 2020. PMID: 32034161 Free PMC article.

2

Data Processing and Analysis for DIA-Based Phosphoproteomics Using Spectronaut.

Martinez-Val A, Bekker-Jensen DB, Hogrebe A, Olsen JV. Martinez-Val A, et al. Among authors: bekker jensen db. Methods Mol Biol. 2021;2361:95-107. doi: 10.1007/978-1-0716-1641-3_6. Methods Mol Biol. 2021. PMID: 34236657

3

Performance Evaluation of the Q Exactive HF-X for Shotgun Proteomics.

Kelstrup CD, Bekker-Jensen DB, Arrey TN, Hogrebe A, Harder A, Olsen JV. Kelstrup CD, et al. J Proteome Res. 2018 Jan 5;17(1):727-738. doi: 10.1021/acs.jproteome.7b00602. Epub 2017 Dec 20. J Proteome Res. 2018. PMID: 29183128

4

Benchmarking common quantification strategies for large-scale phosphoproteomics.

Hogrebe A, von Stechow L, Bekker-Jensen DB, Weinert BT, Kelstrup CD, Olsen JV. Hogrebe A, et al. Nat Commun. 2018 Mar 13;9(1):1045. doi: 10.1038/s41467-018-03309-6. Nat Commun. 2018. PMID: 29535314 Free PMC article.

5

Spatial-proteomics reveals phospho-signaling dynamics at subcellular resolution.

Martinez-Val A, Bekker-Jensen DB, Steigerwald S, Koenig C, Østergaard O, Mehta A, Tran T, Sikorski K, Torres-Vega E, Kwasniewicz E, Brynjólfsdóttir SH, Frankel LB, Kjøbsted R, Krogh N, Lundby A, Bekker-Jensen S, Lund-Johansen F, Olsen JV. Martinez-Val A, et al. Among authors: bekker jensen db. Nat Commun. 2021 Dec 7;12(1):7113. doi: 10.1038/s41467-021-27398-y. Nat Commun. 2021. PMID: 34876567 Free PMC article.

6

An Optimized Shotgun Strategy for the Rapid Generation of Comprehensive Human Proteomes.

Bekker-Jensen DB, Kelstrup CD, Batth TS, Larsen SC, Haldrup C, Bramsen JB, Sørensen KD, Høyer S, Ørntoft TF, Andersen CL, Nielsen ML, Olsen JV. Bekker-Jensen DB, et al. Cell Syst. 2017 Jun 28;4(6):587-599.e4. doi: 10.1016/j.cels.2017.05.009. Epub 2017 Jun 7. Cell Syst. 2017. PMID: 28601559 Free PMC article.

7

UbiSite approach for comprehensive mapping of lysine and N-terminal ubiquitination sites.

Akimov V, Barrio-Hernandez I, Hansen SVF, Hallenborg P, Pedersen AK, Bekker-Jensen DB, Puglia M, Christensen SDK, Vanselow JT, Nielsen MM, Kratchmarova I, Kelstrup CD, Olsen JV, Blagoev B. Akimov V, et al. Nat Struct Mol Biol. 2018 Jul;25(7):631-640. doi: 10.1038/s41594-018-0084-y. Epub 2018 Jul 2. Nat Struct Mol Biol. 2018. PMID: 29967540

8

Oncogenic Mutations Rewire Signaling Pathways by Switching Protein Recruitment to Phosphotyrosine Sites.

Lundby A, Franciosa G, Emdal KB, Refsgaard JC, Gnosa SP, Bekker-Jensen DB, Secher A, Maurya SR, Paul I, Mendez BL, Kelstrup CD, Francavilla C, Kveiborg M, Montoya G, Jensen LJ, Olsen JV. Lundby A, et al. Cell. 2019 Oct 3;179(2):543-560.e26. doi: 10.1016/j.cell.2019.09.008. Cell. 2019. PMID: 31585087 Free article.

9

A Compact Quadrupole-Orbitrap Mass Spectrometer with FAIMS Interface Improves Proteome Coverage in Short LC Gradients.

Bekker-Jensen DB, Martínez-Val A, Steigerwald S, Rüther P, Fort KL, Arrey TN, Harder A, Makarov A, Olsen JV. Bekker-Jensen DB, et al. Mol Cell Proteomics. 2020 Apr;19(4):716-729. doi: 10.1074/mcp.TIR119.001906. Epub 2020 Feb 12. Mol Cell Proteomics. 2020. PMID: 32051234 Free PMC article.

10

A Novel LC System Embeds Analytes in Pre-formed Gradients for Rapid, Ultra-robust Proteomics.

Bache N, Geyer PE, Bekker-Jensen DB, Hoerning O, Falkenby L, Treit PV, Doll S, Paron I, Müller JB, Meier F, Olsen JV, Vorm O, Mann M. Bache N, et al. Mol Cell Proteomics. 2018 Nov;17(11):2284-2296. doi: 10.1074/mcp.TIR118.000853. Epub 2018 Aug 13. Mol Cell Proteomics. 2018. PMID: 30104208 Free PMC article.

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