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V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation.
Fuhrmann L, Jablonski KP, Topolsky I, Batavia AA, Borgsmüller N, Baykal PI, Carrara M, Chen C, Dondi A, Dragan M, Dreifuss D, John A, Langer B, Okoniewski M, du Plessis L, Schmitt U, Singer F, Stadler T, Beerenwinkel N. Fuhrmann L, et al. Among authors: borgsmuller n. Gigascience. 2024 Jan 2;13:giae065. doi: 10.1093/gigascience/giae065. Gigascience. 2024. PMID: 39347649 Free PMC article.
De novo detection of somatic variants in long-read single-cell RNA sequencing data.
Dondi A, Borgsmüller N, Ferreira PF, Haas BJ, Jacob F, Heinzelmann-Schwarz V; Tumor Profiler Consortium; Beerenwinkel N. Dondi A, et al. Among authors: borgsmuller n. bioRxiv [Preprint]. 2024 Mar 8:2024.03.06.583775. doi: 10.1101/2024.03.06.583775. bioRxiv. 2024. PMID: 38496441 Free PMC article. Preprint.