Zhang NR - Search Results

1

Opposing Functions of Interferon Coordinate Adaptive and Innate Immune Responses to Cancer Immune Checkpoint Blockade.

Benci JL, Johnson LR, Choa R, Xu Y, Qiu J, Zhou Z, Xu B, Ye D, Nathanson KL, June CH, Wherry EJ, Zhang NR, Ishwaran H, Hellmann MD, Wolchok JD, Kambayashi T, Minn AJ. Benci JL, et al. Among authors: zhang nr. Cell. 2019 Aug 8;178(4):933-948.e14. doi: 10.1016/j.cell.2019.07.019. Cell. 2019. PMID: 31398344 Free PMC article.

2

Assessing intratumor heterogeneity and tracking longitudinal and spatial clonal evolutionary history by next-generation sequencing.

Jiang Y, Qiu Y, Minn AJ, Zhang NR. Jiang Y, et al. Among authors: zhang nr. Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):E5528-37. doi: 10.1073/pnas.1522203113. Epub 2016 Aug 29. Proc Natl Acad Sci U S A. 2016. PMID: 27573852 Free PMC article.

3

BRCA locus-specific loss of heterozygosity in germline BRCA1 and BRCA2 carriers.

Maxwell KN, Wubbenhorst B, Wenz BM, De Sloover D, Pluta J, Emery L, Barrett A, Kraya AA, Anastopoulos IN, Yu S, Jiang Y, Chen H, Zhang NR, Hackman N, D'Andrea K, Daber R, Morrissette JJD, Mitra N, Feldman M, Domchek SM, Nathanson KL. Maxwell KN, et al. Among authors: zhang nr. Nat Commun. 2017 Aug 22;8(1):319. doi: 10.1038/s41467-017-00388-9. Nat Commun. 2017. PMID: 28831036 Free PMC article.

4

ALLELE-SPECIFIC COPY NUMBER ESTIMATION BY WHOLE EXOME SEQUENCING.

Chen H, Jiang Y, Maxwell KN, Nathanson KL, Zhang N. Chen H, et al. Ann Appl Stat. 2017 Jun;11(2):1169-1192. doi: 10.1214/17-AOAS1043. Epub 2017 Jul 20. Ann Appl Stat. 2017. PMID: 28989557 Free PMC article.

5

Genetic and Genomic Characterization of 462 Melanoma Patient-Derived Xenografts, Tumor Biopsies, and Cell Lines.

Garman B, Anastopoulos IN, Krepler C, Brafford P, Sproesser K, Jiang Y, Wubbenhorst B, Amaravadi R, Bennett J, Beqiri M, Elder D, Flaherty KT, Frederick DT, Gangadhar TC, Guarino M, Hoon D, Karakousis G, Liu Q, Mitra N, Petrelli NJ, Schuchter L, Shannan B, Shields CL, Wargo J, Wenz B, Wilson MA, Xiao M, Xu W, Xu X, Yin X, Zhang NR, Davies MA, Herlyn M, Nathanson KL. Garman B, et al. Among authors: zhang nr. Cell Rep. 2017 Nov 14;21(7):1936-1952. doi: 10.1016/j.celrep.2017.10.052. Cell Rep. 2017. PMID: 29141224 Free PMC article.

6

Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny.

Urrutia E, Chen H, Zhou Z, Zhang NR, Jiang Y. Urrutia E, et al. Among authors: zhang nr. Bioinformatics. 2018 Jun 15;34(12):2126-2128. doi: 10.1093/bioinformatics/bty057. Bioinformatics. 2018. PMID: 29415173 Free PMC article.

7

Integrative DNA copy number detection and genotyping from sequencing and array-based platforms.

Zhou Z, Wang W, Wang LS, Zhang NR. Zhou Z, et al. Among authors: zhang nr. Bioinformatics. 2018 Jul 15;34(14):2349-2355. doi: 10.1093/bioinformatics/bty104. Bioinformatics. 2018. PMID: 29992253 Free PMC article.

8

CODEX2: full-spectrum copy number variation detection by high-throughput DNA sequencing.

Jiang Y, Wang R, Urrutia E, Anastopoulos IN, Nathanson KL, Zhang NR. Jiang Y, et al. Among authors: zhang nr. Genome Biol. 2018 Nov 26;19(1):202. doi: 10.1186/s13059-018-1578-y. Genome Biol. 2018. PMID: 30477554 Free PMC article.

9

Data denoising with transfer learning in single-cell transcriptomics.

Wang J, Agarwal D, Huang M, Hu G, Zhou Z, Ye C, Zhang NR. Wang J, et al. Among authors: zhang nr. Nat Methods. 2019 Sep;16(9):875-878. doi: 10.1038/s41592-019-0537-1. Epub 2019 Aug 30. Nat Methods. 2019. PMID: 31471617 Free PMC article.

10

DENDRO: genetic heterogeneity profiling and subclone detection by single-cell RNA sequencing.

Zhou Z, Xu B, Minn A, Zhang NR. Zhou Z, et al. Among authors: zhang nr. Genome Biol. 2020 Jan 14;21(1):10. doi: 10.1186/s13059-019-1922-x. Genome Biol. 2020. PMID: 31937348 Free PMC article.

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