Dunbrack R - Search Results

1

Assessment of predicted enzymatic activity of α-N-acetylglucosaminidase variants of unknown significance for CAGI 2016.

Clark WT, Kasak L, Bakolitsa C, Hu Z, Andreoletti G, Babbi G, Bromberg Y, Casadio R, Dunbrack R, Folkman L, Ford CT, Jones D, Katsonis P, Kundu K, Lichtarge O, Martelli PL, Mooney SD, Nodzak C, Pal LR, Radivojac P, Savojardo C, Shi X, Zhou Y, Uppal A, Xu Q, Yin Y, Pejaver V, Wang M, Wei L, Moult J, Yu GK, Brenner SE, LeBowitz JH. Clark WT, et al. Among authors: dunbrack r. Hum Mutat. 2019 Sep;40(9):1519-1529. doi: 10.1002/humu.23875. Hum Mutat. 2019. PMID: 31342580 Free PMC article.

2

Meeting review: the Second meeting on the Critical Assessment of Techniques for Protein Structure Prediction (CASP2), Asilomar, California, December 13-16, 1996.

Dunbrack RL Jr, Gerloff DL, Bower M, Chen X, Lichtarge O, Cohen FE. Dunbrack RL Jr, et al. Fold Des. 1997;2(2):R27-42. doi: 10.1016/S1359-0278(97)00011-4. Fold Des. 1997. PMID: 9135979

3

Outcome of a workshop on archiving structural models of biological macromolecules.

Berman HM, Burley SK, Chiu W, Sali A, Adzhubei A, Bourne PE, Bryant SH, Dunbrack RL Jr, Fidelis K, Frank J, Godzik A, Henrick K, Joachimiak A, Heymann B, Jones D, Markley JL, Moult J, Montelione GT, Orengo C, Rossmann MG, Rost B, Saibil H, Schwede T, Standley DM, Westbrook JD. Berman HM, et al. Structure. 2006 Aug;14(8):1211-7. doi: 10.1016/j.str.2006.06.005. Structure. 2006. PMID: 16955948 Free article. No abstract available.

4

ProtBuD: a database of biological unit structures of protein families and superfamilies.

Xu Q, Canutescu A, Obradovic Z, Dunbrack RL Jr. Xu Q, et al. Bioinformatics. 2006 Dec 1;22(23):2876-82. doi: 10.1093/bioinformatics/btl490. Epub 2006 Oct 2. Bioinformatics. 2006. PMID: 17018535

5

Statistical analysis of interface similarity in crystals of homologous proteins.

Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL Jr. Xu Q, et al. J Mol Biol. 2008 Aug 29;381(2):487-507. doi: 10.1016/j.jmb.2008.06.002. Epub 2008 Jun 7. J Mol Biol. 2008. PMID: 18599072 Free PMC article.

6

An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases.

Weitzner B, Meehan T, Xu Q, Dunbrack RL Jr. Weitzner B, et al. Proteins. 2009 May 1;75(2):289-95. doi: 10.1002/prot.22347. Proteins. 2009. PMID: 19173308 Free PMC article.

7

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms.

Xu Q, Dunbrack RL Jr. Xu Q, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D761-70. doi: 10.1093/nar/gkq1059. Epub 2010 Oct 29. Nucleic Acids Res. 2011. PMID: 21036862 Free PMC article.

8

Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB.

Xu Q, Dunbrack RL Jr. Xu Q, et al. Bioinformatics. 2012 Nov 1;28(21):2763-72. doi: 10.1093/bioinformatics/bts533. Epub 2012 Aug 31. Bioinformatics. 2012. PMID: 22942020 Free PMC article.

9

Prediction of phenotypes of missense mutations in human proteins from biological assemblies.

Wei Q, Xu Q, Dunbrack RL Jr. Wei Q, et al. Proteins. 2013 Feb;81(2):199-213. doi: 10.1002/prot.24176. Epub 2012 Nov 5. Proteins. 2013. PMID: 22965855 Free PMC article.

10

BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers.

Shapovalov MV, Wang Q, Xu Q, Andrake M, Dunbrack RL Jr. Shapovalov MV, et al. PLoS One. 2014 Jun 12;9(6):e98309. doi: 10.1371/journal.pone.0098309. eCollection 2014. PLoS One. 2014. PMID: 24922057 Free PMC article.

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