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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2.
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodríguez AM, Chase J, Cope EK, Da Silva R, Diener C, Dorrestein PC, Douglas GM, Durall DM, Duvallet C, Edwardson CF, Ernst M, Estaki M, Fouquier J, Gauglitz JM, Gibbons SM, Gibson DL, Gonzalez A, Gorlick K, Guo J, Hillmann B, Holmes S, Holste H, Huttenhower C, Huttley GA, Janssen S, Jarmusch AK, Jiang L, Kaehler BD, Kang KB, Keefe CR, Keim P, Kelley ST, Knights D, Koester I, Kosciolek T, Kreps J, Langille MGI, Lee J, Ley R, Liu YX, Loftfield E, Lozupone C, Maher M, Marotz C, Martin BD, McDonald D, McIver LJ, Melnik AV, Metcalf JL, Morgan SC, Morton JT, Naimey AT, Navas-Molina JA, Nothias LF, Orchanian SB, Pearson T, Peoples SL, Petras D, Preuss ML, Pruesse E, Rasmussen LB, Rivers A, Robeson MS 2nd, Rosenthal P, Segata N, Shaffer M, Shiffer A, Sinha R, Song SJ, Spear JR, Swafford AD, Thompson LR, Torres PJ, Trinh P, Tripathi A, Turnbaugh PJ, Ul-Hasan S, van der Hooft JJJ, Vargas F, Vázquez-Baeza Y, Vogtmann E, von Hippel M, Walters W, Wan Y, Wang M, Warren J, Weber KC, Will… See abstract for full author list ➔ Bolyen E, et al. Among authors: morton jt. Nat Biotechnol. 2019 Aug;37(8):852-857. doi: 10.1038/s41587-019-0209-9. Nat Biotechnol. 2019. PMID: 31341288 Free PMC article. No abstract available.
Mass Spectrometry-Based Visualization of Molecules Associated with Human Habitats.
Petras D, Nothias LF, Quinn RA, Alexandrov T, Bandeira N, Bouslimani A, Castro-Falcón G, Chen L, Dang T, Floros DJ, Hook V, Garg N, Hoffner N, Jiang Y, Kapono CA, Koester I, Knight R, Leber CA, Ling TJ, Luzzatto-Knaan T, McCall LI, McGrath AP, Meehan MJ, Merritt JK, Mills RH, Morton J, Podvin S, Protsyuk I, Purdy T, Satterfield K, Searles S, Shah S, Shires S, Steffen D, White M, Todoric J, Tuttle R, Wojnicz A, Sapp V, Vargas F, Yang J, Zhang C, Dorrestein PC. Petras D, et al. Anal Chem. 2016 Nov 15;88(22):10775-10784. doi: 10.1021/acs.analchem.6b03456. Epub 2016 Oct 24. Anal Chem. 2016. PMID: 27732780 Free PMC article.
Bringing the Dynamic Microbiome to Life with Animations.
Vázquez-Baeza Y, Gonzalez A, Smarr L, McDonald D, Morton JT, Navas-Molina JA, Knight R. Vázquez-Baeza Y, et al. Among authors: morton jt. Cell Host Microbe. 2017 Jan 11;21(1):7-10. doi: 10.1016/j.chom.2016.12.009. Cell Host Microbe. 2017. PMID: 28081445 Free article.
Balance Trees Reveal Microbial Niche Differentiation.
Morton JT, Sanders J, Quinn RA, McDonald D, Gonzalez A, Vázquez-Baeza Y, Navas-Molina JA, Song SJ, Metcalf JL, Hyde ER, Lladser M, Dorrestein PC, Knight R. Morton JT, et al. mSystems. 2017 Jan 17;2(1):e00162-16. doi: 10.1128/mSystems.00162-16. eCollection 2017 Jan-Feb. mSystems. 2017. PMID: 28144630 Free PMC article.
Uncovering the Horseshoe Effect in Microbial Analyses.
Morton JT, Toran L, Edlund A, Metcalf JL, Lauber C, Knight R. Morton JT, et al. mSystems. 2017 Feb 21;2(1):e00166-16. doi: 10.1128/mSystems.00166-16. eCollection 2017 Jan-Feb. mSystems. 2017. PMID: 28251186 Free PMC article.
Deblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns.
Amir A, McDonald D, Navas-Molina JA, Kopylova E, Morton JT, Zech Xu Z, Kightley EP, Thompson LR, Hyde ER, Gonzalez A, Knight R. Amir A, et al. Among authors: morton jt. mSystems. 2017 Mar 7;2(2):e00191-16. doi: 10.1128/mSystems.00191-16. eCollection 2017 Mar-Apr. mSystems. 2017. PMID: 28289731 Free PMC article.
An Elegan(t) Screen for Drug-Microbe Interactions.
Vrbanac A, Debelius JW, Jiang L, Morton JT, Dorrestein P, Knight R. Vrbanac A, et al. Among authors: morton jt. Cell Host Microbe. 2017 May 10;21(5):555-556. doi: 10.1016/j.chom.2017.04.014. Cell Host Microbe. 2017. PMID: 28494234 Free article.
The Microbiome in Posttraumatic Stress Disorder and Trauma-Exposed Controls: An Exploratory Study.
Hemmings SMJ, Malan-Müller S, van den Heuvel LL, Demmitt BA, Stanislawski MA, Smith DG, Bohr AD, Stamper CE, Hyde ER, Morton JT, Marotz CA, Siebler PH, Braspenning M, Van Criekinge W, Hoisington AJ, Brenner LA, Postolache TT, McQueen MB, Krauter KS, Knight R, Seedat S, Lowry CA. Hemmings SMJ, et al. Among authors: morton jt. Psychosom Med. 2017 Oct;79(8):936-946. doi: 10.1097/PSY.0000000000000512. Psychosom Med. 2017. PMID: 28700459 Free PMC article.
61 results