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Page 1
CellProfiler 3.0: Next-generation image processing for biology.
McQuin C, Goodman A, Chernyshev V, Kamentsky L, Cimini BA, Karhohs KW, Doan M, Ding L, Rafelski SM, Thirstrup D, Wiegraebe W, Singh S, Becker T, Caicedo JC, Carpenter AE. McQuin C, et al. PLoS Biol. 2018 Jul 3;16(7):e2005970. doi: 10.1371/journal.pbio.2005970. eCollection 2018 Jul. PLoS Biol. 2018. PMID: 29969450 Free PMC article.
Nucleus segmentation across imaging experiments: the 2018 Data Science Bowl.
Caicedo JC, Goodman A, Karhohs KW, Cimini BA, Ackerman J, Haghighi M, Heng C, Becker T, Doan M, McQuin C, Rohban M, Singh S, Carpenter AE. Caicedo JC, et al. Among authors: mcquin c. Nat Methods. 2019 Dec;16(12):1247-1253. doi: 10.1038/s41592-019-0612-7. Epub 2019 Oct 21. Nat Methods. 2019. PMID: 31636459 Free PMC article.
Label-Free Leukemia Monitoring by Computer Vision.
Doan M, Case M, Masic D, Hennig H, McQuin C, Caicedo J, Singh S, Goodman A, Wolkenhauer O, Summers HD, Jamieson D, Delft FV, Filby A, Carpenter AE, Rees P, Irving J. Doan M, et al. Among authors: mcquin c. Cytometry A. 2020 Apr;97(4):407-414. doi: 10.1002/cyto.a.23987. Epub 2020 Feb 24. Cytometry A. 2020. PMID: 32091180 Free PMC article.
Weakly Supervised Learning of Single-Cell Feature Embeddings.
Caicedo JC, McQuin C, Goodman A, Singh S, Carpenter AE. Caicedo JC, et al. Among authors: mcquin c. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2018 Jun;2018:9309-9318. doi: 10.1109/CVPR.2018.00970. Epub 2018 Dec 17. Proc IEEE Comput Soc Conf Comput Vis Pattern Recognit. 2018. PMID: 30918435 Free PMC article.
Objective assessment of stored blood quality by deep learning.
Doan M, Sebastian JA, Caicedo JC, Siegert S, Roch A, Turner TR, Mykhailova O, Pinto RN, McQuin C, Goodman A, Parsons MJ, Wolkenhauer O, Hennig H, Singh S, Wilson A, Acker JP, Rees P, Kolios MC, Carpenter AE. Doan M, et al. Among authors: mcquin c. Proc Natl Acad Sci U S A. 2020 Sep 1;117(35):21381-21390. doi: 10.1073/pnas.2001227117. Epub 2020 Aug 24. Proc Natl Acad Sci U S A. 2020. PMID: 32839303 Free PMC article.
Learning representations for image-based profiling of perturbations.
Moshkov N, Bornholdt M, Benoit S, Smith M, McQuin C, Goodman A, Senft RA, Han Y, Babadi M, Horvath P, Cimini BA, Carpenter AE, Singh S, Caicedo JC. Moshkov N, et al. Among authors: mcquin c. Nat Commun. 2024 Feb 21;15(1):1594. doi: 10.1038/s41467-024-45999-1. Nat Commun. 2024. PMID: 38383513 Free PMC article.