Furlong EE - Search Results

1

BRD4 bimodal binding at promoters and drug-induced displacement at Pol II pause sites associates with I-BET sensitivity.

Khoueiry P, Ward Gahlawat A, Petretich M, Michon AM, Simola D, Lam E, Furlong EE, Benes V, Dawson MA, Prinjha RK, Drewes G, Grandi P. Khoueiry P, et al. Among authors: furlong ee. Epigenetics Chromatin. 2019 Jul 2;12(1):39. doi: 10.1186/s13072-019-0286-5. Epigenetics Chromatin. 2019. PMID: 31266503 Free PMC article.

2

Shadow Enhancers Are Pervasive Features of Developmental Regulatory Networks.

Cannavò E, Khoueiry P, Garfield DA, Geeleher P, Zichner T, Gustafson EH, Ciglar L, Korbel JO, Furlong EE. Cannavò E, et al. Among authors: furlong ee. Curr Biol. 2016 Jan 11;26(1):38-51. doi: 10.1016/j.cub.2015.11.034. Epub 2015 Dec 10. Curr Biol. 2016. PMID: 26687625 Free PMC article.

3

Uncoupling evolutionary changes in DNA sequence, transcription factor occupancy and enhancer activity.

Khoueiry P, Girardot C, Ciglar L, Peng PC, Gustafson EH, Sinha S, Furlong EE. Khoueiry P, et al. Among authors: furlong ee. Elife. 2017 Aug 9;6:e28440. doi: 10.7554/eLife.28440. Elife. 2017. PMID: 28792889 Free PMC article.

4

The Role of Chromatin Accessibility in cis-Regulatory Evolution.

Peng PC, Khoueiry P, Girardot C, Reddington JP, Garfield DA, Furlong EEM, Sinha S. Peng PC, et al. Genome Biol Evol. 2019 Jul 1;11(7):1813-1828. doi: 10.1093/gbe/evz103. Genome Biol Evol. 2019. PMID: 31114856 Free PMC article.

5

The hourglass model of evolutionary conservation during embryogenesis extends to developmental enhancers with signatures of positive selection.

Liu J, Viales RR, Khoueiry P, Reddington JP, Girardot C, Furlong EEM, Robinson-Rechavi M. Liu J, et al. Genome Res. 2021 Sep;31(9):1573-1581. doi: 10.1101/gr.275212.121. Epub 2021 Jul 15. Genome Res. 2021. PMID: 34266978 Free PMC article.

6

Tissue-specific analysis of chromatin state identifies temporal signatures of enhancer activity during embryonic development.

Bonn S, Zinzen RP, Girardot C, Gustafson EH, Perez-Gonzalez A, Delhomme N, Ghavi-Helm Y, Wilczyński B, Riddell A, Furlong EE. Bonn S, et al. Among authors: furlong ee. Nat Genet. 2012 Jan 8;44(2):148-56. doi: 10.1038/ng.1064. Nat Genet. 2012. PMID: 22231485

7

Transcription factors: from enhancer binding to developmental control.

Spitz F, Furlong EE. Spitz F, et al. Among authors: furlong ee. Nat Rev Genet. 2012 Sep;13(9):613-26. doi: 10.1038/nrg3207. Epub 2012 Aug 7. Nat Rev Genet. 2012. PMID: 22868264 Review.

8

Chromatin Immunoprecipitation for Analyzing Transcription Factor Binding and Histone Modifications in Drosophila.

Ghavi-Helm Y, Zhao B, Furlong EE. Ghavi-Helm Y, et al. Among authors: furlong ee. Methods Mol Biol. 2016;1478:263-277. doi: 10.1007/978-1-4939-6371-3_16. Methods Mol Biol. 2016. PMID: 27730588 Review.

9

Promoter shape varies across populations and affects promoter evolution and expression noise.

Schor IE, Degner JF, Harnett D, Cannavò E, Casale FP, Shim H, Garfield DA, Birney E, Stephens M, Stegle O, Furlong EE. Schor IE, et al. Among authors: furlong ee. Nat Genet. 2017 Apr;49(4):550-558. doi: 10.1038/ng.3791. Epub 2017 Feb 13. Nat Genet. 2017. PMID: 28191888

10

Opbp is a new architectural/insulator protein required for ribosomal gene expression.

Zolotarev N, Maksimenko O, Kyrchanova O, Sokolinskaya E, Osadchiy I, Girardot C, Bonchuk A, Ciglar L, Furlong EEM, Georgiev P. Zolotarev N, et al. Nucleic Acids Res. 2017 Dec 1;45(21):12285-12300. doi: 10.1093/nar/gkx840. Nucleic Acids Res. 2017. PMID: 29036346 Free PMC article.

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