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African Orphan Crops Consortium (AOCC): status of developing genomic resources for African orphan crops.
Hendre PS, Muthemba S, Kariba R, Muchugi A, Fu Y, Chang Y, Song B, Liu H, Liu M, Liao X, Sahu SK, Wang S, Li L, Lu H, Peng S, Cheng S, Xu X, Yang H, Wang J, Liu X, Simons A, Shapiro HY, Mumm RH, Van Deynze A, Jamnadass R. Hendre PS, et al. Among authors: chang y. Planta. 2019 Sep;250(3):989-1003. doi: 10.1007/s00425-019-03156-9. Epub 2019 May 9. Planta. 2019. PMID: 31073657 Review.
The draft genomes of five agriculturally important African orphan crops.
Chang Y, Liu H, Liu M, Liao X, Sahu SK, Fu Y, Song B, Cheng S, Kariba R, Muthemba S, Hendre PS, Mayes S, Ho WK, Yssel AEJ, Kendabie P, Wang S, Li L, Muchugi A, Jamnadass R, Lu H, Peng S, Van Deynze A, Simons A, Yana-Shapiro H, Van de Peer Y, Xu X, Yang H, Wang J, Liu X. Chang Y, et al. Gigascience. 2019 Mar 1;8(3):giy152. doi: 10.1093/gigascience/giy152. Gigascience. 2019. PMID: 30535374 Free PMC article.
Genomes of early-diverging streptophyte algae shed light on plant terrestrialization.
Wang S, Li L, Li H, Sahu SK, Wang H, Xu Y, Xian W, Song B, Liang H, Cheng S, Chang Y, Song Y, Çebi Z, Wittek S, Reder T, Peterson M, Yang H, Wang J, Melkonian B, Van de Peer Y, Xu X, Wong GK, Melkonian M, Liu H, Liu X. Wang S, et al. Among authors: chang y. Nat Plants. 2020 Feb;6(2):95-106. doi: 10.1038/s41477-019-0560-3. Epub 2019 Dec 16. Nat Plants. 2020. PMID: 31844283 Free PMC article.
Molecular digitization of a botanical garden: high-depth whole-genome sequencing of 689 vascular plant species from the Ruili Botanical Garden.
Liu H, Wei J, Yang T, Mu W, Song B, Yang T, Fu Y, Wang X, Hu G, Li W, Zhou H, Chang Y, Chen X, Chen H, Cheng L, He X, Cai H, Cai X, Wang M, Li Y, Sahu SK, Yang J, Wang Y, Mu R, Liu J, Zhao J, Huang Z, Xu X, Liu X. Liu H, et al. Among authors: chang y. Gigascience. 2019 Apr 1;8(4):giz007. doi: 10.1093/gigascience/giz007. Gigascience. 2019. PMID: 30689836 Free PMC article.
Comparative Plastome Analysis of Root- and Stem-Feeding Parasites of Santalales Untangle the Footprints of Feeding Mode and Lifestyle Transitions.
Chen X, Fang D, Wu C, Liu B, Liu Y, Sahu SK, Song B, Yang S, Yang T, Wei J, Wang X, Zhang W, Xu Q, Wang H, Yuan L, Liao X, Chen L, Chen Z, Yuan F, Chang Y, Lu L, Yang H, Wang J, Xu X, Liu X, Wicke S, Liu H. Chen X, et al. Among authors: chang y. Genome Biol Evol. 2020 Jan 1;12(1):3663-3676. doi: 10.1093/gbe/evz271. Genome Biol Evol. 2020. PMID: 31845987 Free PMC article.
Phylogenomics reveals multiple losses of nitrogen-fixing root nodule symbiosis.
Griesmann M, Chang Y, Liu X, Song Y, Haberer G, Crook MB, Billault-Penneteau B, Lauressergues D, Keller J, Imanishi L, Roswanjaya YP, Kohlen W, Pujic P, Battenberg K, Alloisio N, Liang Y, Hilhorst H, Salgado MG, Hocher V, Gherbi H, Svistoonoff S, Doyle JJ, He S, Xu Y, Xu S, Qu J, Gao Q, Fang X, Fu Y, Normand P, Berry AM, Wall LG, Ané JM, Pawlowski K, Xu X, Yang H, Spannagl M, Mayer KFX, Wong GK, Parniske M, Delaux PM, Cheng S. Griesmann M, et al. Among authors: chang y. Science. 2018 Jul 13;361(6398):eaat1743. doi: 10.1126/science.aat1743. Epub 2018 May 24. Science. 2018. PMID: 29794220
A chromosome-level genome of black rockfish, Sebastes schlegelii, provides insights into the evolution of live birth.
He Y, Chang Y, Bao L, Yu M, Li R, Niu J, Fan G, Song W, Seim I, Qin Y, Li X, Liu J, Kong X, Peng M, Sun M, Wang M, Qu J, Wang X, Liu X, Wu X, Zhao X, Wang X, Zhang Y, Guo J, Liu Y, Liu K, Wang Y, Zhang H, Liu L, Wang M, Yu H, Wang X, Cheng J, Wang Z, Xu X, Wang J, Yang H, Lee SM, Liu X, Zhang Q, Qi J. He Y, et al. Among authors: chang y. Mol Ecol Resour. 2019 Sep;19(5):1309-1321. doi: 10.1111/1755-0998.13034. Epub 2019 Jul 9. Mol Ecol Resour. 2019. PMID: 31077549
Initial data release and announcement of the 10,000 Fish Genomes Project (Fish10K).
Fan G, Song Y, Yang L, Huang X, Zhang S, Zhang M, Yang X, Chang Y, Zhang H, Li Y, Liu S, Yu L, Chu J, Seim I, Feng C, Near TJ, Wing RA, Wang W, Wang K, Wang J, Xu X, Yang H, Liu X, Chen N, He S. Fan G, et al. Among authors: chang y. Gigascience. 2020 Aug 1;9(8):giaa080. doi: 10.1093/gigascience/giaa080. Gigascience. 2020. PMID: 32810278 Free PMC article.
An Indo-Pacific Humpback Dolphin Genome Reveals Insights into Chromosome Evolution and the Demography of a Vulnerable Species.
Zhang P, Zhao Y, Li C, Lin M, Dong L, Zhang R, Liu M, Li K, Zhang H, Liu X, Zhang Y, Yuan Y, Liu H, Seim I, Sun S, Du X, Chang Y, Li F, Liu S, Lee SM, Wang K, Wang D, Wang X, McGowen MR, Jefferson TA, Olsen MT, Stiller J, Zhang G, Xu X, Yang H, Fan G, Liu X, Li S. Zhang P, et al. Among authors: chang y. iScience. 2020 Oct 3;23(10):101640. doi: 10.1016/j.isci.2020.101640. eCollection 2020 Oct 23. iScience. 2020. PMID: 33103078 Free PMC article.
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