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ClinOmicsTrailbc: a visual analytics tool for breast cancer treatment stratification.
Schneider L, Kehl T, Thedinga K, Grammes NL, Backes C, Mohr C, Schubert B, Lenhof K, Gerstner N, Hartkopf AD, Wallwiener M, Kohlbacher O, Keller A, Meese E, Graf N, Lenhof HP. Schneider L, et al. Among authors: schubert b. Bioinformatics. 2019 Dec 15;35(24):5171-5181. doi: 10.1093/bioinformatics/btz302. Bioinformatics. 2019. PMID: 31038669 Free PMC article.
EpiToolKit--a web-based workbench for vaccine design.
Schubert B, Brachvogel HP, Jürges C, Kohlbacher O. Schubert B, et al. Bioinformatics. 2015 Jul 1;31(13):2211-3. doi: 10.1093/bioinformatics/btv116. Epub 2015 Feb 20. Bioinformatics. 2015. PMID: 25712691 Free PMC article.
FRED 2: an immunoinformatics framework for Python.
Schubert B, Walzer M, Brachvogel HP, Szolek A, Mohr C, Kohlbacher O. Schubert B, et al. Bioinformatics. 2016 Jul 1;32(13):2044-6. doi: 10.1093/bioinformatics/btw113. Epub 2016 Feb 26. Bioinformatics. 2016. PMID: 27153717 Free PMC article.
OptiType: precision HLA typing from next-generation sequencing data.
Szolek A, Schubert B, Mohr C, Sturm M, Feldhahn M, Kohlbacher O. Szolek A, et al. Among authors: schubert b. Bioinformatics. 2014 Dec 1;30(23):3310-6. doi: 10.1093/bioinformatics/btu548. Epub 2014 Aug 20. Bioinformatics. 2014. PMID: 25143287 Free PMC article.
Population-specific design of de-immunized protein biotherapeutics.
Schubert B, Schärfe C, Dönnes P, Hopf T, Marks D, Kohlbacher O. Schubert B, et al. PLoS Comput Biol. 2018 Mar 2;14(3):e1005983. doi: 10.1371/journal.pcbi.1005983. eCollection 2018 Mar. PLoS Comput Biol. 2018. PMID: 29499035 Free PMC article.
Induction of neoantigen-reactive T cells from healthy donors.
Ali M, Foldvari Z, Giannakopoulou E, Böschen ML, Strønen E, Yang W, Toebes M, Schubert B, Kohlbacher O, Schumacher TN, Olweus J. Ali M, et al. Among authors: schubert b. Nat Protoc. 2019 Jun;14(6):1926-1943. doi: 10.1038/s41596-019-0170-6. Epub 2019 May 17. Nat Protoc. 2019. PMID: 31101906
An unusually high substitution rate in transplant-associated BK polyomavirus in vivo is further concentrated in HLA-C-bound viral peptides.
Domingo-Calap P, Schubert B, Joly M, Solis M, Untrau M, Carapito R, Georgel P, Caillard S, Fafi-Kremer S, Paul N, Kohlbacher O, González-Candelas F, Bahram S. Domingo-Calap P, et al. Among authors: schubert b. PLoS Pathog. 2018 Oct 18;14(10):e1007368. doi: 10.1371/journal.ppat.1007368. eCollection 2018 Oct. PLoS Pathog. 2018. PMID: 30335851 Free PMC article.
280 results