Rueda DS - Search Results

1

DNA stretching induces Cas9 off-target activity.

Newton MD, Taylor BJ, Driessen RPC, Roos L, Cvetesic N, Allyjaun S, Lenhard B, Cuomo ME, Rueda DS. Newton MD, et al. Among authors: rueda ds. Nat Struct Mol Biol. 2019 Mar;26(3):185-192. doi: 10.1038/s41594-019-0188-z. Epub 2019 Feb 25. Nat Struct Mol Biol. 2019. PMID: 30804513 Free PMC article.

2

RNA folding dynamics using laser-assisted single-molecule refolding.

Paudel B, Rueda D. Paudel B, et al. Methods Mol Biol. 2014;1086:289-307. doi: 10.1007/978-1-62703-667-2_17. Methods Mol Biol. 2014. PMID: 24136611

3

Recruitment, Duplex Unwinding and Protein-Mediated Inhibition of the Dead-Box RNA Helicase Dbp2 at Actively Transcribed Chromatin.

Ma WK, Paudel BP, Xing Z, Sabath IG, Rueda D, Tran EJ. Ma WK, et al. J Mol Biol. 2016 Mar 27;428(6):1091-1106. doi: 10.1016/j.jmb.2016.02.005. Epub 2016 Feb 11. J Mol Biol. 2016. PMID: 26876600 Free PMC article.

4

Protein-RNA Dynamics in the Central Junction Control 30S Ribosome Assembly.

Baker KA, Lamichhane R, Lamichhane T, Rueda D, Cunningham PR. Baker KA, et al. J Mol Biol. 2016 Sep 11;428(18):3615-31. doi: 10.1016/j.jmb.2016.05.010. Epub 2016 May 15. J Mol Biol. 2016. PMID: 27192112

5

A high-resolution map of transcriptional repression.

Liang Z, Brown KE, Carroll T, Taylor B, Vidal IF, Hendrich B, Rueda D, Fisher AG, Merkenschlager M. Liang Z, et al. Elife. 2017 Mar 20;6:e22767. doi: 10.7554/eLife.22767. Elife. 2017. PMID: 28318487 Free PMC article.

6

Active and poised promoter states drive folding of the extended HoxB locus in mouse embryonic stem cells.

Barbieri M, Xie SQ, Torlai Triglia E, Chiariello AM, Bianco S, de Santiago I, Branco MR, Rueda D, Nicodemi M, Pombo A. Barbieri M, et al. Nat Struct Mol Biol. 2017 Jun;24(6):515-524. doi: 10.1038/nsmb.3402. Epub 2017 Apr 24. Nat Struct Mol Biol. 2017. PMID: 28436944 Free article.

7

Mapping the sugar dependency for rational generation of a DNA-RNA hybrid-guided Cas9 endonuclease.

Rueda FO, Bista M, Newton MD, Goeppert AU, Cuomo ME, Gordon E, Kröner F, Read JA, Wrigley JD, Rueda D, Taylor BJM. Rueda FO, et al. Nat Commun. 2017 Nov 20;8(1):1610. doi: 10.1038/s41467-017-01732-9. Nat Commun. 2017. PMID: 29151576 Free PMC article.

8

Retroviral integration into nucleosomes through DNA looping and sliding along the histone octamer.

Wilson MD, Renault L, Maskell DP, Ghoneim M, Pye VE, Nans A, Rueda DS, Cherepanov P, Costa A. Wilson MD, et al. Among authors: rueda ds. Nat Commun. 2019 Sep 13;10(1):4189. doi: 10.1038/s41467-019-12007-w. Nat Commun. 2019. PMID: 31519882 Free PMC article.

9

A conserved ATP- and Scc2/4-dependent activity for cohesin in tethering DNA molecules.

Gutierrez-Escribano P, Newton MD, Llauró A, Huber J, Tanasie L, Davy J, Aly I, Aramayo R, Montoya A, Kramer H, Stigler J, Rueda DS, Aragon L. Gutierrez-Escribano P, et al. Among authors: rueda ds. Sci Adv. 2019 Nov 27;5(11):eaay6804. doi: 10.1126/sciadv.aay6804. eCollection 2019 Nov. Sci Adv. 2019. PMID: 31807710 Free PMC article.

10

Single-molecule analysis reveals cooperative stimulation of Rad51 filament nucleation and growth by mediator proteins.

Belan O, Barroso C, Kaczmarczyk A, Anand R, Federico S, O'Reilly N, Newton MD, Maeots E, Enchev RI, Martinez-Perez E, Rueda DS, Boulton SJ. Belan O, et al. Among authors: rueda ds. Mol Cell. 2021 Mar 4;81(5):1058-1073.e7. doi: 10.1016/j.molcel.2020.12.020. Epub 2021 Jan 8. Mol Cell. 2021. PMID: 33421363 Free PMC article.

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