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From molecules to dynamic biological communities.
McDonald D, Vázquez-Baeza Y, Walters WA, Caporaso JG, Knight R. McDonald D, et al. Among authors: knight r. Biol Philos. 2013 Mar;28(2):241-259. doi: 10.1007/s10539-013-9364-4. Epub 2013 Feb 5. Biol Philos. 2013. PMID: 23483075 Free PMC article.
Advancing our understanding of the human microbiome using QIIME.
Navas-Molina JA, Peralta-Sánchez JM, González A, McMurdie PJ, Vázquez-Baeza Y, Xu Z, Ursell LK, Lauber C, Zhou H, Song SJ, Huntley J, Ackermann GL, Berg-Lyons D, Holmes S, Caporaso JG, Knight R. Navas-Molina JA, et al. Among authors: knight r. Methods Enzymol. 2013;531:371-444. doi: 10.1016/B978-0-12-407863-5.00019-8. Methods Enzymol. 2013. PMID: 24060131 Free PMC article.
The treatment-naive microbiome in new-onset Crohn's disease.
Gevers D, Kugathasan S, Denson LA, Vázquez-Baeza Y, Van Treuren W, Ren B, Schwager E, Knights D, Song SJ, Yassour M, Morgan XC, Kostic AD, Luo C, González A, McDonald D, Haberman Y, Walters T, Baker S, Rosh J, Stephens M, Heyman M, Markowitz J, Baldassano R, Griffiths A, Sylvester F, Mack D, Kim S, Crandall W, Hyams J, Huttenhower C, Knight R, Xavier RJ. Gevers D, et al. Among authors: knight r. Cell Host Microbe. 2014 Mar 12;15(3):382-392. doi: 10.1016/j.chom.2014.02.005. Cell Host Microbe. 2014. PMID: 24629344 Free PMC article.
SnapShot: the human microbiome.
González A, Vázquez-Baeza Y, Knight R. González A, et al. Among authors: knight r. Cell. 2014 Jul 31;158(3):690-690.e1. doi: 10.1016/j.cell.2014.07.019. Cell. 2014. PMID: 25083877 Free article. No abstract available.
Longitudinal analysis of microbial interaction between humans and the indoor environment.
Lax S, Smith DP, Hampton-Marcell J, Owens SM, Handley KM, Scott NM, Gibbons SM, Larsen P, Shogan BD, Weiss S, Metcalf JL, Ursell LK, Vázquez-Baeza Y, Van Treuren W, Hasan NA, Gibson MK, Colwell R, Dantas G, Knight R, Gilbert JA. Lax S, et al. Among authors: knight r. Science. 2014 Aug 29;345(6200):1048-52. doi: 10.1126/science.1254529. Science. 2014. PMID: 25170151 Free PMC article.
Dynamic changes in short- and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection.
Weingarden A, González A, Vázquez-Baeza Y, Weiss S, Humphry G, Berg-Lyons D, Knights D, Unno T, Bobr A, Kang J, Khoruts A, Knight R, Sadowsky MJ. Weingarden A, et al. Among authors: knight r. Microbiome. 2015 Mar 30;3:10. doi: 10.1186/s40168-015-0070-0. eCollection 2015. Microbiome. 2015. PMID: 25825673 Free PMC article.
Phylogenetic and ecological factors impact the gut microbiota of two Neotropical primate species.
Amato KR, Martinez-Mota R, Righini N, Raguet-Schofield M, Corcione FP, Marini E, Humphrey G, Gogul G, Gaffney J, Lovelace E, Williams L, Luong A, Dominguez-Bello MG, Stumpf RM, White B, Nelson KE, Knight R, Leigh SR. Amato KR, et al. Among authors: knight r. Oecologia. 2016 Mar;180(3):717-33. doi: 10.1007/s00442-015-3507-z. Epub 2015 Nov 24. Oecologia. 2016. PMID: 26597549
Microbial community assembly and metabolic function during mammalian corpse decomposition.
Metcalf JL, Xu ZZ, Weiss S, Lax S, Van Treuren W, Hyde ER, Song SJ, Amir A, Larsen P, Sangwan N, Haarmann D, Humphrey GC, Ackermann G, Thompson LR, Lauber C, Bibat A, Nicholas C, Gebert MJ, Petrosino JF, Reed SC, Gilbert JA, Lynne AM, Bucheli SR, Carter DO, Knight R. Metcalf JL, et al. Among authors: knight r. Science. 2016 Jan 8;351(6269):158-62. doi: 10.1126/science.aad2646. Epub 2015 Dec 10. Science. 2016. PMID: 26657285
3,417 results