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Reproducible protocols for metagenomic analysis of human faecal phageomes.
Shkoporov AN, Ryan FJ, Draper LA, Forde A, Stockdale SR, Daly KM, McDonnell SA, Nolan JA, Sutton TDS, Dalmasso M, McCann A, Ross RP, Hill C. Shkoporov AN, et al. Among authors: ryan fj. Microbiome. 2018 Apr 10;6(1):68. doi: 10.1186/s40168-018-0446-z. Microbiome. 2018. PMID: 29631623 Free PMC article.
The Human Gut Virome Is Highly Diverse, Stable, and Individual Specific.
Shkoporov AN, Clooney AG, Sutton TDS, Ryan FJ, Daly KM, Nolan JA, McDonnell SA, Khokhlova EV, Draper LA, Forde A, Guerin E, Velayudhan V, Ross RP, Hill C. Shkoporov AN, et al. Among authors: ryan fj. Cell Host Microbe. 2019 Oct 9;26(4):527-541.e5. doi: 10.1016/j.chom.2019.09.009. Cell Host Microbe. 2019. PMID: 31600503 Free article.
Whole-Virome Analysis Sheds Light on Viral Dark Matter in Inflammatory Bowel Disease.
Clooney AG, Sutton TDS, Shkoporov AN, Holohan RK, Daly KM, O'Regan O, Ryan FJ, Draper LA, Plevy SE, Ross RP, Hill C. Clooney AG, et al. Among authors: ryan fj. Cell Host Microbe. 2019 Dec 11;26(6):764-778.e5. doi: 10.1016/j.chom.2019.10.009. Epub 2019 Nov 19. Cell Host Microbe. 2019. PMID: 31757768 Free article.
Colonic microbiota is associated with inflammation and host epigenomic alterations in inflammatory bowel disease.
Ryan FJ, Ahern AM, Fitzgerald RS, Laserna-Mendieta EJ, Power EM, Clooney AG, O'Donoghue KW, McMurdie PJ, Iwai S, Crits-Christoph A, Sheehan D, Moran C, Flemer B, Zomer AL, Fanning A, O'Callaghan J, Walton J, Temko A, Stack W, Jackson L, Joyce SA, Melgar S, DeSantis TZ, Bell JT, Shanahan F, Claesson MJ. Ryan FJ, et al. Nat Commun. 2020 Mar 23;11(1):1512. doi: 10.1038/s41467-020-15342-5. Nat Commun. 2020. PMID: 32251296 Free PMC article.
Ranking microbiome variance in inflammatory bowel disease: a large longitudinal intercontinental study.
Clooney AG, Eckenberger J, Laserna-Mendieta E, Sexton KA, Bernstein MT, Vagianos K, Sargent M, Ryan FJ, Moran C, Sheehan D, Sleator RD, Targownik LE, Bernstein CN, Shanahan F, Claesson MJ. Clooney AG, et al. Among authors: ryan fj. Gut. 2021 Mar;70(3):499-510. doi: 10.1136/gutjnl-2020-321106. Epub 2020 Jun 14. Gut. 2021. PMID: 32536605 Free PMC article.
127 results