Chiaromonte F - Search Results

1

Long-read sequencing technology indicates genome-wide effects of non-B DNA on polymerization speed and error rate.

Guiblet WM, Cremona MA, Cechova M, Harris RS, Kejnovská I, Kejnovsky E, Eckert K, Chiaromonte F, Makova KD. Guiblet WM, et al. Among authors: chiaromonte f. Genome Res. 2018 Dec;28(12):1767-1778. doi: 10.1101/gr.241257.118. Epub 2018 Nov 6. Genome Res. 2018. PMID: 30401733 Free PMC article.

2

Distinguishing regulatory DNA from neutral sites.

Elnitski L, Hardison RC, Li J, Yang S, Kolbe D, Eswara P, O'Connor MJ, Schwartz S, Miller W, Chiaromonte F. Elnitski L, et al. Among authors: chiaromonte f. Genome Res. 2003 Jan;13(1):64-72. doi: 10.1101/gr.817703. Genome Res. 2003. PMID: 12529307 Free PMC article.

3

Gene length and proximity to neighbors affect genome-wide expression levels.

Chiaromonte F, Miller W, Bouhassira EE. Chiaromonte F, et al. Genome Res. 2003 Dec;13(12):2602-8. doi: 10.1101/gr.1169203. Epub 2003 Nov 12. Genome Res. 2003. PMID: 14613975 Free PMC article.

4

Patterns of insertions and their covariation with substitutions in the rat, mouse, and human genomes.

Yang S, Smit AF, Schwartz S, Chiaromonte F, Roskin KM, Haussler D, Miller W, Hardison RC. Yang S, et al. Among authors: chiaromonte f. Genome Res. 2004 Apr;14(4):517-27. doi: 10.1101/gr.1984404. Genome Res. 2004. PMID: 15059992 Free PMC article.

5

Insertions and deletions are male biased too: a whole-genome analysis in rodents.

Makova KD, Yang S, Chiaromonte F. Makova KD, et al. Among authors: chiaromonte f. Genome Res. 2004 Apr;14(4):567-73. doi: 10.1101/gr.1971104. Genome Res. 2004. PMID: 15059997 Free PMC article.

6

Regulatory potential scores from genome-wide three-way alignments of human, mouse, and rat.

Kolbe D, Taylor J, Elnitski L, Eswara P, Li J, Miller W, Hardison R, Chiaromonte F. Kolbe D, et al. Among authors: chiaromonte f. Genome Res. 2004 Apr;14(4):700-7. doi: 10.1101/gr.1976004. Genome Res. 2004. PMID: 15060013 Free PMC article.

7

Evaluation of regulatory potential and conservation scores for detecting cis-regulatory modules in aligned mammalian genome sequences.

King DC, Taylor J, Elnitski L, Chiaromonte F, Miller W, Hardison RC. King DC, et al. Among authors: chiaromonte f. Genome Res. 2005 Aug;15(8):1051-60. doi: 10.1101/gr.3642605. Epub 2005 Jul 15. Genome Res. 2005. PMID: 16024817 Free PMC article.

8

Strong and weak male mutation bias at different sites in the primate genomes: insights from the human-chimpanzee comparison.

Taylor J, Tyekucheva S, Zody M, Chiaromonte F, Makova KD. Taylor J, et al. Among authors: chiaromonte f. Mol Biol Evol. 2006 Mar;23(3):565-73. doi: 10.1093/molbev/msj060. Epub 2005 Nov 9. Mol Biol Evol. 2006. PMID: 16280537

9

Genomic environment predicts expression patterns on the human inactive X chromosome.

Carrel L, Park C, Tyekucheva S, Dunn J, Chiaromonte F, Makova KD. Carrel L, et al. Among authors: chiaromonte f. PLoS Genet. 2006 Sep 29;2(9):e151. doi: 10.1371/journal.pgen.0020151. Epub 2006 Aug 3. PLoS Genet. 2006. PMID: 17009873 Free PMC article.

10

Experimental validation of predicted mammalian erythroid cis-regulatory modules.

Wang H, Zhang Y, Cheng Y, Zhou Y, King DC, Taylor J, Chiaromonte F, Kasturi J, Petrykowska H, Gibb B, Dorman C, Miller W, Dore LC, Welch J, Weiss MJ, Hardison RC. Wang H, et al. Among authors: chiaromonte f. Genome Res. 2006 Dec;16(12):1480-92. doi: 10.1101/gr.5353806. Epub 2006 Oct 12. Genome Res. 2006. PMID: 17038566 Free PMC article.

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