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firestar--advances in the prediction of functionally important residues.
Lopez G, Maietta P, Rodriguez JM, Valencia A, Tress ML. Lopez G, et al. Among authors: tress ml. Nucleic Acids Res. 2011 Jul;39(Web Server issue):W235-41. doi: 10.1093/nar/gkr437. Epub 2011 Jun 14. Nucleic Acids Res. 2011. PMID: 21672959 Free PMC article.
GENCODE: the reference human genome annotation for The ENCODE Project.
Harrow J, Frankish A, Gonzalez JM, Tapanari E, Diekhans M, Kokocinski F, Aken BL, Barrell D, Zadissa A, Searle S, Barnes I, Bignell A, Boychenko V, Hunt T, Kay M, Mukherjee G, Rajan J, Despacio-Reyes G, Saunders G, Steward C, Harte R, Lin M, Howald C, Tanzer A, Derrien T, Chrast J, Walters N, Balasubramanian S, Pei B, Tress M, Rodriguez JM, Ezkurdia I, van Baren J, Brent M, Haussler D, Kellis M, Valencia A, Reymond A, Gerstein M, Guigó R, Hubbard TJ. Harrow J, et al. Genome Res. 2012 Sep;22(9):1760-74. doi: 10.1101/gr.135350.111. Genome Res. 2012. PMID: 22955987 Free PMC article.
APPRIS: annotation of principal and alternative splice isoforms.
Rodriguez JM, Maietta P, Ezkurdia I, Pietrelli A, Wesselink JJ, Lopez G, Valencia A, Tress ML. Rodriguez JM, et al. Among authors: tress ml. Nucleic Acids Res. 2013 Jan;41(Database issue):D110-7. doi: 10.1093/nar/gks1058. Epub 2012 Nov 17. Nucleic Acids Res. 2013. PMID: 23161672 Free PMC article.
Analyzing the first drafts of the human proteome.
Ezkurdia I, Vázquez J, Valencia A, Tress M. Ezkurdia I, et al. J Proteome Res. 2014 Aug 1;13(8):3854-5. doi: 10.1021/pr500572z. Epub 2014 Jul 16. J Proteome Res. 2014. PMID: 25014353 Free PMC article.
Most highly expressed protein-coding genes have a single dominant isoform.
Ezkurdia I, Rodriguez JM, Carrillo-de Santa Pau E, Vázquez J, Valencia A, Tress ML. Ezkurdia I, et al. Among authors: tress ml. J Proteome Res. 2015 Apr 3;14(4):1880-7. doi: 10.1021/pr501286b. Epub 2015 Mar 11. J Proteome Res. 2015. PMID: 25732134 Free PMC article.
Correction to "Analyzing the first drafts of the human proteome".
Ezkurdia I, Vázquez J, Valencia A, Tress M. Ezkurdia I, et al. J Proteome Res. 2015 Apr 3;14(4):1991. doi: 10.1021/acs.jproteome.5b00186. Epub 2015 Mar 10. J Proteome Res. 2015. PMID: 25756922 Free PMC article. No abstract available.
77 results