Lindeman I - Search Results

1

BraCeR: B-cell-receptor reconstruction and clonality inference from single-cell RNA-seq.

Lindeman I, Emerton G, Mamanova L, Snir O, Polanski K, Qiao SW, Sollid LM, Teichmann SA, Stubbington MJT. Lindeman I, et al. Nat Methods. 2018 Aug;15(8):563-565. doi: 10.1038/s41592-018-0082-3. Nat Methods. 2018. PMID: 30065371 No abstract available.

2

Exploiting antigen receptor information to quantify index switching in single-cell transcriptome sequencing experiments.

Yao Y, Zia A, Wyrożemski Ł, Lindeman I, Sandve GK, Qiao SW. Yao Y, et al. Among authors: lindeman i. PLoS One. 2018 Dec 5;13(12):e0208484. doi: 10.1371/journal.pone.0208484. eCollection 2018. PLoS One. 2018. PMID: 30517183 Free PMC article.

3

Mosaic deletion patterns of the human antibody heavy chain gene locus shown by Bayesian haplotyping.

Gidoni M, Snir O, Peres A, Polak P, Lindeman I, Mikocziova I, Sarna VK, Lundin KEA, Clouser C, Vigneault F, Collins AM, Sollid LM, Yaari G. Gidoni M, et al. Among authors: lindeman i. Nat Commun. 2019 Feb 7;10(1):628. doi: 10.1038/s41467-019-08489-3. Nat Commun. 2019. PMID: 30733445 Free PMC article.

4

Single-Cell Transcriptomics of Regulatory T Cells Reveals Trajectories of Tissue Adaptation.

Miragaia RJ, Gomes T, Chomka A, Jardine L, Riedel A, Hegazy AN, Whibley N, Tucci A, Chen X, Lindeman I, Emerton G, Krausgruber T, Shields J, Haniffa M, Powrie F, Teichmann SA. Miragaia RJ, et al. Among authors: lindeman i. Immunity. 2019 Feb 19;50(2):493-504.e7. doi: 10.1016/j.immuni.2019.01.001. Epub 2019 Feb 5. Immunity. 2019. PMID: 30737144 Free PMC article.

5

Antigen Receptor Sequence Reconstruction and Clonality Inference from scRNA-Seq Data.

Lindeman I, Stubbington MJT. Lindeman I, et al. Methods Mol Biol. 2019;1935:223-249. doi: 10.1007/978-1-4939-9057-3_15. Methods Mol Biol. 2019. PMID: 30758830

6

Polymorphisms in human immunoglobulin heavy chain variable genes and their upstream regions.

Mikocziova I, Gidoni M, Lindeman I, Peres A, Snir O, Yaari G, Sollid LM. Mikocziova I, et al. Among authors: lindeman i. Nucleic Acids Res. 2020 Jun 4;48(10):5499-5510. doi: 10.1093/nar/gkaa310. Nucleic Acids Res. 2020. PMID: 32365177 Free PMC article.

7

Longevity, clonal relationship, and transcriptional program of celiac disease-specific plasma cells.

Lindeman I, Zhou C, Eggesbø LM, Miao Z, Polak J, Lundin KEA, Jahnsen J, Qiao SW, Iversen R, Sollid LM. Lindeman I, et al. J Exp Med. 2021 Feb 1;218(2):e20200852. doi: 10.1084/jem.20200852. J Exp Med. 2021. PMID: 33095260 Free PMC article.

8

Single-cell approaches to dissect adaptive immune responses involved in autoimmunity: the case of celiac disease.

Lindeman I, Sollid LM. Lindeman I, et al. Mucosal Immunol. 2022 Jan;15(1):51-63. doi: 10.1038/s41385-021-00452-0. Epub 2021 Sep 16. Mucosal Immunol. 2022. PMID: 34531547 Free article. Review.

9

Stereotyped B-cell responses are linked to IgG constant region polymorphisms in multiple sclerosis.

Lindeman I, Polak J, Qiao SW, Holmøy T, Høglund RA, Vartdal F, Berg-Hansen P, Sollid LM, Lossius A. Lindeman I, et al. Eur J Immunol. 2022 Apr;52(4):550-565. doi: 10.1002/eji.202149576. Epub 2022 Feb 20. Eur J Immunol. 2022. PMID: 35094395 Free article.

10

Single-cell transcriptomics combined with proteomics of intrathecal IgG reveal transcriptional heterogeneity of oligoclonal IgG-secreting cells in multiple sclerosis.

Polak J, Wagnerberger JH, Torsetnes SB, Lindeman I, Høglund RAA, Vartdal F, Sollid LM, Lossius A. Polak J, et al. Among authors: lindeman i. Front Cell Neurosci. 2023 Jun 8;17:1189709. doi: 10.3389/fncel.2023.1189709. eCollection 2023. Front Cell Neurosci. 2023. PMID: 37362001 Free PMC article.

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