Pachter L - Search Results

1

Accurate design of translational output by a neural network model of ribosome distribution.

Tunney R, McGlincy NJ, Graham ME, Naddaf N, Pachter L, Lareau LF. Tunney R, et al. Among authors: pachter l. Nat Struct Mol Biol. 2018 Jul;25(7):577-582. doi: 10.1038/s41594-018-0080-2. Epub 2018 Jul 2. Nat Struct Mol Biol. 2018. PMID: 29967537 Free PMC article.

2

Differential analysis of RNA-seq incorporating quantification uncertainty.

Pimentel H, Bray NL, Puente S, Melsted P, Pachter L. Pimentel H, et al. Among authors: pachter l. Nat Methods. 2017 Jul;14(7):687-690. doi: 10.1038/nmeth.4324. Epub 2017 Jun 5. Nat Methods. 2017. PMID: 28581496 Free article.

3

Large multiple organism gene finding by collapsed Gibbs sampling.

Chatterji S, Pachter L. Chatterji S, et al. Among authors: pachter l. J Comput Biol. 2005 Jul-Aug;12(6):599-608. doi: 10.1089/cmb.2005.12.599. J Comput Biol. 2005. PMID: 16108706

4

Streaming fragment assignment for real-time analysis of sequencing experiments.

Roberts A, Pachter L. Roberts A, et al. Among authors: pachter l. Nat Methods. 2013 Jan;10(1):71-3. doi: 10.1038/nmeth.2251. Epub 2012 Nov 18. Nat Methods. 2013. PMID: 23160280 Free PMC article.

5

RNA Velocity: Molecular Kinetics from Single-Cell RNA-Seq.

Svensson V, Pachter L. Svensson V, et al. Among authors: pachter l. Mol Cell. 2018 Oct 4;72(1):7-9. doi: 10.1016/j.molcel.2018.09.026. Mol Cell. 2018. PMID: 30290149 Free article.

6

A discriminative learning approach to differential expression analysis for single-cell RNA-seq.

Ntranos V, Yi L, Melsted P, Pachter L. Ntranos V, et al. Among authors: pachter l. Nat Methods. 2019 Feb;16(2):163-166. doi: 10.1038/s41592-018-0303-9. Epub 2019 Jan 21. Nat Methods. 2019. PMID: 30664774

7

Highly multiplexed single-cell RNA-seq by DNA oligonucleotide tagging of cellular proteins.

Gehring J, Hwee Park J, Chen S, Thomson M, Pachter L. Gehring J, et al. Among authors: pachter l. Nat Biotechnol. 2020 Jan;38(1):35-38. doi: 10.1038/s41587-019-0372-z. Epub 2019 Dec 23. Nat Biotechnol. 2020. PMID: 31873215

8

Isoform cell-type specificity in the mouse primary motor cortex.

Booeshaghi AS, Yao Z, van Velthoven C, Smith K, Tasic B, Zeng H, Pachter L. Booeshaghi AS, et al. Among authors: pachter l. Nature. 2021 Oct;598(7879):195-199. doi: 10.1038/s41586-021-03969-3. Epub 2021 Oct 6. Nature. 2021. PMID: 34616073 Free PMC article.

9

Museum of spatial transcriptomics.

Moses L, Pachter L. Moses L, et al. Among authors: pachter l. Nat Methods. 2022 May;19(5):534-546. doi: 10.1038/s41592-022-01409-2. Epub 2022 Mar 10. Nat Methods. 2022. PMID: 35273392 Review.

10

Publisher Correction: Museum of spatial transcriptomics.

Moses L, Pachter L. Moses L, et al. Among authors: pachter l. Nat Methods. 2022 May;19(5):628. doi: 10.1038/s41592-022-01494-3. Nat Methods. 2022. PMID: 35440782 No abstract available.

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