Li W - Search Results

1

CancerDetector: ultrasensitive and non-invasive cancer detection at the resolution of individual reads using cell-free DNA methylation sequencing data.

Li W, Li Q, Kang S, Same M, Zhou Y, Sun C, Liu CC, Matsuoka L, Sher L, Wong WH, Alber F, Zhou XJ. Li W, et al. Among authors: li q. Nucleic Acids Res. 2018 Sep 6;46(15):e89. doi: 10.1093/nar/gky423. Nucleic Acids Res. 2018. PMID: 29897492 Free PMC article.

2

Automated multidimensional phenotypic profiling using large public microarray repositories.

Xu M, Li W, James GM, Mehan MR, Zhou XJ. Xu M, et al. Among authors: li w. Proc Natl Acad Sci U S A. 2009 Jul 28;106(30):12323-8. doi: 10.1073/pnas.0900883106. Epub 2009 Jul 9. Proc Natl Acad Sci U S A. 2009. PMID: 19590007 Free PMC article.

3

Unraveling complex temporal associations in cellular systems across multiple time-series microarray datasets.

Li W, Xu M, Zhou XJ. Li W, et al. J Biomed Inform. 2010 Aug;43(4):550-9. doi: 10.1016/j.jbi.2009.12.006. Epub 2010 Jan 18. J Biomed Inform. 2010. PMID: 20083231 Free article.

4

Integrative analysis of many weighted co-expression networks using tensor computation.

Li W, Liu CC, Zhang T, Li H, Waterman MS, Zhou XJ. Li W, et al. Among authors: li h. PLoS Comput Biol. 2011 Jun;7(6):e1001106. doi: 10.1371/journal.pcbi.1001106. Epub 2011 Jun 16. PLoS Comput Biol. 2011. PMID: 21698123 Free PMC article.

5

Algorithm to identify frequent coupled modules from two-layered network series: application to study transcription and splicing coupling.

Li W, Dai C, Liu CC, Zhou XJ. Li W, et al. J Comput Biol. 2012 Jun;19(6):710-30. doi: 10.1089/cmb.2012.0025. J Comput Biol. 2012. PMID: 22697243 Free PMC article.

6

Identifying multi-layer gene regulatory modules from multi-dimensional genomic data.

Li W, Zhang S, Liu CC, Zhou XJ. Li W, et al. Bioinformatics. 2012 Oct 1;28(19):2458-66. doi: 10.1093/bioinformatics/bts476. Epub 2012 Aug 3. Bioinformatics. 2012. PMID: 22863767 Free PMC article.

7

Discovery of multi-dimensional modules by integrative analysis of cancer genomic data.

Zhang S, Liu CC, Li W, Shen H, Laird PW, Zhou XJ. Zhang S, et al. Among authors: li w. Nucleic Acids Res. 2012 Oct;40(19):9379-91. doi: 10.1093/nar/gks725. Epub 2012 Aug 8. Nucleic Acids Res. 2012. PMID: 22879375 Free PMC article.

8

Integrating many co-splicing networks to reconstruct splicing regulatory modules.

Dai C, Li W, Liu J, Zhou XJ. Dai C, et al. Among authors: li w. BMC Syst Biol. 2012;6 Suppl 1(Suppl 1):S17. doi: 10.1186/1752-0509-6-S1-S17. Epub 2012 Jul 16. BMC Syst Biol. 2012. PMID: 23046974 Free PMC article.

9

High-resolution functional annotation of human transcriptome: predicting isoform functions by a novel multiple instance-based label propagation method.

Li W, Kang S, Liu CC, Zhang S, Shi Y, Liu Y, Zhou XJ. Li W, et al. Nucleic Acids Res. 2014 Apr;42(6):e39. doi: 10.1093/nar/gkt1362. Epub 2013 Dec 25. Nucleic Acids Res. 2014. PMID: 24369432 Free PMC article.

10

Integrative analysis of many RNA-seq datasets to study alternative splicing.

Li W, Dai C, Kang S, Zhou XJ. Li W, et al. Methods. 2014 Jun 1;67(3):313-24. doi: 10.1016/j.ymeth.2014.02.024. Epub 2014 Feb 28. Methods. 2014. PMID: 24583115 Free PMC article.

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