Behsaz B - Search Results

1

American Gut: an Open Platform for Citizen Science Microbiome Research.

McDonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, DeRight Goldasich L, Dorrestein PC, Dunn RR, Fahimipour AK, Gaffney J, Gilbert JA, Gogul G, Green JL, Hugenholtz P, Humphrey G, Huttenhower C, Jackson MA, Janssen S, Jeste DV, Jiang L, Kelley ST, Knights D, Kosciolek T, Ladau J, Leach J, Marotz C, Meleshko D, Melnik AV, Metcalf JL, Mohimani H, Montassier E, Navas-Molina J, Nguyen TT, Peddada S, Pevzner P, Pollard KS, Rahnavard G, Robbins-Pianka A, Sangwan N, Shorenstein J, Smarr L, Song SJ, Spector T, Swafford AD, Thackray VG, Thompson LR, Tripathi A, Vázquez-Baeza Y, Vrbanac A, Wischmeyer P, Wolfe E, Zhu Q; American Gut Consortium; Knight R. McDonald D, et al. Among authors: behsaz b. mSystems. 2018 May 15;3(3):e00031-18. doi: 10.1128/mSystems.00031-18. eCollection 2018 May-Jun. mSystems. 2018. PMID: 29795809 Free PMC article.

2

De Novo Peptide Sequencing Reveals Many Cyclopeptides in the Human Gut and Other Environments.

Behsaz B, Mohimani H, Gurevich A, Prjibelski A, Fisher M, Vargas F, Smarr L, Dorrestein PC, Mylne JS, Pevzner PA. Behsaz B, et al. Cell Syst. 2020 Jan 22;10(1):99-108.e5. doi: 10.1016/j.cels.2019.11.007. Epub 2019 Dec 18. Cell Syst. 2020. PMID: 31864964 Free article.

3

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.

Behsaz B, Bode E, Gurevich A, Shi YN, Grundmann F, Acharya D, Caraballo-Rodríguez AM, Bouslimani A, Panitchpakdi M, Linck A, Guan C, Oh J, Dorrestein PC, Bode HB, Pevzner PA, Mohimani H. Behsaz B, et al. Nat Commun. 2021 May 28;12(1):3225. doi: 10.1038/s41467-021-23502-4. Nat Commun. 2021. PMID: 34050176 Free PMC article.

4

Publisher Correction: Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery.

Behsaz B, Bode E, Gurevich A, Shi YN, Grundmann F, Acharya D, Caraballo-Rodríguez AM, Bouslimani A, Panitchpakdi M, Linck A, Guan C, Oh J, Dorrestein PC, Bode HB, Pevzner PA, Mohimani H. Behsaz B, et al. Nat Commun. 2021 Jul 8;12(1):4318. doi: 10.1038/s41467-021-24441-w. Nat Commun. 2021. PMID: 34238936 Free PMC article. No abstract available.

5

AdenPredictor: accurate prediction of the adenylation domain specificity of nonribosomal peptide biosynthetic gene clusters in microbial genomes.

Mongia M, Baral R, Adduri A, Yan D, Liu Y, Bian Y, Kim P, Behsaz B, Mohimani H. Mongia M, et al. Among authors: behsaz b. Bioinformatics. 2023 Jun 30;39(39 Suppl 1):i40-i46. doi: 10.1093/bioinformatics/btad235. Bioinformatics. 2023. PMID: 37387149 Free PMC article.

6

A family of small, cyclic peptides buried in preproalbumin since the Eocene epoch.

Fisher MF, Zhang J, Taylor NL, Howard MJ, Berkowitz O, Debowski AW, Behsaz B, Whelan J, Pevzner PA, Mylne JS. Fisher MF, et al. Among authors: behsaz b. Plant Direct. 2018 Feb;2(2):e00042. doi: 10.1002/pld3.42. Epub 2018 Feb 28. Plant Direct. 2018. PMID: 30417166 Free PMC article.

7

metaFlye: scalable long-read metagenome assembly using repeat graphs.

Kolmogorov M, Bickhart DM, Behsaz B, Gurevich A, Rayko M, Shin SB, Kuhn K, Yuan J, Polevikov E, Smith TPL, Pevzner PA. Kolmogorov M, et al. Among authors: behsaz b. Nat Methods. 2020 Nov;17(11):1103-1110. doi: 10.1038/s41592-020-00971-x. Epub 2020 Oct 5. Nat Methods. 2020. PMID: 33020656 Free PMC article.

8

LINKS: Scalable, alignment-free scaffolding of draft genomes with long reads.

Warren RL, Yang C, Vandervalk BP, Behsaz B, Lagman A, Jones SJ, Birol I. Warren RL, et al. Among authors: behsaz b. Gigascience. 2015 Aug 4;4:35. doi: 10.1186/s13742-015-0076-3. eCollection 2015. Gigascience. 2015. PMID: 26244089 Free PMC article.

9

De novo Transcriptome Assemblies of Rana (Lithobates) catesbeiana and Xenopus laevis Tadpole Livers for Comparative Genomics without Reference Genomes.

Birol I, Behsaz B, Hammond SA, Kucuk E, Veldhoen N, Helbing CC. Birol I, et al. Among authors: behsaz b. PLoS One. 2015 Jun 29;10(6):e0130720. doi: 10.1371/journal.pone.0130720. eCollection 2015. PLoS One. 2015. PMID: 26121473 Free PMC article.

10

De novo assembly of the ringed seal (Pusa hispida) blubber transcriptome: A tool that enables identification of molecular health indicators associated with PCB exposure.

Brown TM, Hammond SA, Behsaz B, Veldhoen N, Birol I, Helbing CC. Brown TM, et al. Among authors: behsaz b. Aquat Toxicol. 2017 Apr;185:48-57. doi: 10.1016/j.aquatox.2017.02.004. Epub 2017 Feb 3. Aquat Toxicol. 2017. PMID: 28187360

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