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SoS Notebook: an interactive multi-language data analysis environment.
Peng B, Wang G, Ma J, Leong MC, Wakefield C, Melott J, Chiu Y, Du D, Weinstein JN. Peng B, et al. Among authors: melott j. Bioinformatics. 2018 Nov 1;34(21):3768-3770. doi: 10.1093/bioinformatics/bty405. Bioinformatics. 2018. PMID: 29790910 Free PMC article.
TransVar: a multilevel variant annotator for precision genomics.
Zhou W, Chen T, Chong Z, Rohrdanz MA, Melott JM, Wakefield C, Zeng J, Weinstein JN, Meric-Bernstam F, Mills GB, Chen K. Zhou W, et al. Among authors: melott jm. Nat Methods. 2015 Nov;12(11):1002-3. doi: 10.1038/nmeth.3622. Nat Methods. 2015. PMID: 26513549 Free PMC article. No abstract available.
TCGASpliceSeq a compendium of alternative mRNA splicing in cancer.
Ryan M, Wong WC, Brown R, Akbani R, Su X, Broom B, Melott J, Weinstein J. Ryan M, et al. Among authors: melott j. Nucleic Acids Res. 2016 Jan 4;44(D1):D1018-22. doi: 10.1093/nar/gkv1288. Epub 2015 Nov 23. Nucleic Acids Res. 2016. PMID: 26602693 Free PMC article.
The Cancer Genome Atlas Pan-Cancer analysis project.
Cancer Genome Atlas Research Network; Weinstein JN, Collisson EA, Mills GB, Shaw KR, Ozenberger BA, Ellrott K, Shmulevich I, Sander C, Stuart JM. Cancer Genome Atlas Research Network, et al. Nat Genet. 2013 Oct;45(10):1113-20. doi: 10.1038/ng.2764. Nat Genet. 2013. PMID: 24071849 Free PMC article.