Liu XS - Search Results

1

VIPER: Visualization Pipeline for RNA-seq, a Snakemake workflow for efficient and complete RNA-seq analysis.

Cornwell M, Vangala M, Taing L, Herbert Z, Köster J, Li B, Sun H, Li T, Zhang J, Qiu X, Pun M, Jeselsohn R, Brown M, Liu XS, Long HW. Cornwell M, et al. Among authors: liu xs. BMC Bioinformatics. 2018 Apr 12;19(1):135. doi: 10.1186/s12859-018-2139-9. BMC Bioinformatics. 2018. PMID: 29649993 Free PMC article.

2

Chromosome-wide mapping of estrogen receptor binding reveals long-range regulation requiring the forkhead protein FoxA1.

Carroll JS, Liu XS, Brodsky AS, Li W, Meyer CA, Szary AJ, Eeckhoute J, Shao W, Hestermann EV, Geistlinger TR, Fox EA, Silver PA, Brown M. Carroll JS, et al. Among authors: liu xs. Cell. 2005 Jul 15;122(1):33-43. doi: 10.1016/j.cell.2005.05.008. Cell. 2005. PMID: 16009131 Free article.

3

Model-based analysis of tiling-arrays for ChIP-chip.

Johnson WE, Li W, Meyer CA, Gottardo R, Carroll JS, Brown M, Liu XS. Johnson WE, et al. Among authors: liu xs. Proc Natl Acad Sci U S A. 2006 Aug 15;103(33):12457-62. doi: 10.1073/pnas.0601180103. Epub 2006 Aug 8. Proc Natl Acad Sci U S A. 2006. PMID: 16895995 Free PMC article.

4

Genome-wide analysis of estrogen receptor binding sites.

Carroll JS, Meyer CA, Song J, Li W, Geistlinger TR, Eeckhoute J, Brodsky AS, Keeton EK, Fertuck KC, Hall GF, Wang Q, Bekiranov S, Sementchenko V, Fox EA, Silver PA, Gingeras TR, Liu XS, Brown M. Carroll JS, et al. Among authors: liu xs. Nat Genet. 2006 Nov;38(11):1289-97. doi: 10.1038/ng1901. Epub 2006 Oct 1. Nat Genet. 2006. PMID: 17013392

5

A hierarchical network of transcription factors governs androgen receptor-dependent prostate cancer growth.

Wang Q, Li W, Liu XS, Carroll JS, Jänne OA, Keeton EK, Chinnaiyan AM, Pienta KJ, Brown M. Wang Q, et al. Among authors: liu xs. Mol Cell. 2007 Aug 3;27(3):380-92. doi: 10.1016/j.molcel.2007.05.041. Mol Cell. 2007. PMID: 17679089 Free PMC article.

6

FoxA1 translates epigenetic signatures into enhancer-driven lineage-specific transcription.

Lupien M, Eeckhoute J, Meyer CA, Wang Q, Zhang Y, Li W, Carroll JS, Liu XS, Brown M. Lupien M, et al. Among authors: liu xs. Cell. 2008 Mar 21;132(6):958-70. doi: 10.1016/j.cell.2008.01.018. Cell. 2008. PMID: 18358809 Free PMC article.

7

Model-based analysis of ChIP-Seq (MACS).

Zhang Y, Liu T, Meyer CA, Eeckhoute J, Johnson DS, Bernstein BE, Nusbaum C, Myers RM, Brown M, Li W, Liu XS. Zhang Y, et al. Among authors: liu xs, liu t. Genome Biol. 2008;9(9):R137. doi: 10.1186/gb-2008-9-9-r137. Epub 2008 Sep 17. Genome Biol. 2008. PMID: 18798982 Free PMC article.

8

Identifying positioned nucleosomes with epigenetic marks in human from ChIP-Seq.

Zhang Y, Shin H, Song JS, Lei Y, Liu XS. Zhang Y, et al. Among authors: liu xs. BMC Genomics. 2008 Nov 13;9:537. doi: 10.1186/1471-2164-9-537. BMC Genomics. 2008. PMID: 19014516 Free PMC article.

9

Integrative analysis of HIF binding and transactivation reveals its role in maintaining histone methylation homeostasis.

Xia X, Lemieux ME, Li W, Carroll JS, Brown M, Liu XS, Kung AL. Xia X, et al. Among authors: liu xs. Proc Natl Acad Sci U S A. 2009 Mar 17;106(11):4260-5. doi: 10.1073/pnas.0810067106. Epub 2009 Mar 2. Proc Natl Acad Sci U S A. 2009. PMID: 19255431 Free PMC article.

10

Coactivator function defines the active estrogen receptor alpha cistrome.

Lupien M, Eeckhoute J, Meyer CA, Krum SA, Rhodes DR, Liu XS, Brown M. Lupien M, et al. Among authors: liu xs. Mol Cell Biol. 2009 Jun;29(12):3413-23. doi: 10.1128/MCB.00020-09. Epub 2009 Apr 13. Mol Cell Biol. 2009. PMID: 19364822 Free PMC article.

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