Knight R - Search Results

1

Enterotypes in the landscape of gut microbial community composition.

Costea PI, Hildebrand F, Arumugam M, Bäckhed F, Blaser MJ, Bushman FD, de Vos WM, Ehrlich SD, Fraser CM, Hattori M, Huttenhower C, Jeffery IB, Knights D, Lewis JD, Ley RE, Ochman H, O'Toole PW, Quince C, Relman DA, Shanahan F, Sunagawa S, Wang J, Weinstock GM, Wu GD, Zeller G, Zhao L, Raes J, Knight R, Bork P. Costea PI, et al. Among authors: knight r. Nat Microbiol. 2018 Jan;3(1):8-16. doi: 10.1038/s41564-017-0072-8. Epub 2017 Dec 18. Nat Microbiol. 2018. PMID: 29255284 Free PMC article. Review.

2

UniFrac: a new phylogenetic method for comparing microbial communities.

Lozupone C, Knight R. Lozupone C, et al. Among authors: knight r. Appl Environ Microbiol. 2005 Dec;71(12):8228-35. doi: 10.1128/AEM.71.12.8228-8235.2005. Appl Environ Microbiol. 2005. PMID: 16332807 Free PMC article.

3

UniFrac--an online tool for comparing microbial community diversity in a phylogenetic context.

Lozupone C, Hamady M, Knight R. Lozupone C, et al. Among authors: knight r. BMC Bioinformatics. 2006 Aug 7;7:371. doi: 10.1186/1471-2105-7-371. BMC Bioinformatics. 2006. PMID: 16893466 Free PMC article.

4

Quantitative and qualitative beta diversity measures lead to different insights into factors that structure microbial communities.

Lozupone CA, Hamady M, Kelley ST, Knight R. Lozupone CA, et al. Among authors: knight r. Appl Environ Microbiol. 2007 Mar;73(5):1576-85. doi: 10.1128/AEM.01996-06. Epub 2007 Jan 12. Appl Environ Microbiol. 2007. PMID: 17220268 Free PMC article.

5

The human microbiome: eliminating the biomedical/environmental dichotomy in microbial ecology.

Ley RE, Knight R, Gordon JI. Ley RE, et al. Among authors: knight r. Environ Microbiol. 2007 Jan;9(1):3-4. doi: 10.1111/j.1462-2920.2006.01222_3.x. Environ Microbiol. 2007. PMID: 17227400 No abstract available.

6

Short pyrosequencing reads suffice for accurate microbial community analysis.

Liu Z, Lozupone C, Hamady M, Bushman FD, Knight R. Liu Z, et al. Among authors: knight r. Nucleic Acids Res. 2007;35(18):e120. doi: 10.1093/nar/gkm541. Epub 2007 Sep 18. Nucleic Acids Res. 2007. PMID: 17881377 Free PMC article.

7

The human microbiome project.

Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. Turnbaugh PJ, et al. Among authors: knight r. Nature. 2007 Oct 18;449(7164):804-10. doi: 10.1038/nature06244. Nature. 2007. PMID: 17943116 Free PMC article.

8

The macaque gut microbiome in health, lentiviral infection, and chronic enterocolitis.

McKenna P, Hoffmann C, Minkah N, Aye PP, Lackner A, Liu Z, Lozupone CA, Hamady M, Knight R, Bushman FD. McKenna P, et al. Among authors: knight r. PLoS Pathog. 2008 Feb 8;4(2):e20. doi: 10.1371/journal.ppat.0040020. PLoS Pathog. 2008. PMID: 18248093 Free PMC article.

9

Error-correcting barcoded primers for pyrosequencing hundreds of samples in multiplex.

Hamady M, Walker JJ, Harris JK, Gold NJ, Knight R. Hamady M, et al. Among authors: knight r. Nat Methods. 2008 Mar;5(3):235-7. doi: 10.1038/nmeth.1184. Epub 2008 Feb 10. Nat Methods. 2008. PMID: 18264105 Free PMC article.

10

Host-bacterial coevolution and the search for new drug targets.

Zaneveld J, Turnbaugh PJ, Lozupone C, Ley RE, Hamady M, Gordon JI, Knight R. Zaneveld J, et al. Among authors: knight r. Curr Opin Chem Biol. 2008 Feb;12(1):109-14. doi: 10.1016/j.cbpa.2008.01.015. Epub 2008 Mar 5. Curr Opin Chem Biol. 2008. PMID: 18280814 Free PMC article. Review.

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