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Gramene 2018: unifying comparative genomics and pathway resources for plant research.
Tello-Ruiz MK, Naithani S, Stein JC, Gupta P, Campbell M, Olson A, Wei S, Preece J, Geniza MJ, Jiao Y, Lee YK, Wang B, Mulvaney J, Chougule K, Elser J, Al-Bader N, Kumari S, Thomason J, Kumar V, Bolser DM, Naamati G, Tapanari E, Fonseca N, Huerta L, Iqbal H, Keays M, Munoz-Pomer Fuentes A, Tang A, Fabregat A, D'Eustachio P, Weiser J, Stein LD, Petryszak R, Papatheodorou I, Kersey PJ, Lockhart P, Taylor C, Jaiswal P, Ware D. Tello-Ruiz MK, et al. Among authors: stein ld, stein jc. Nucleic Acids Res. 2018 Jan 4;46(D1):D1181-D1189. doi: 10.1093/nar/gkx1111. Nucleic Acids Res. 2018. PMID: 29165610 Free PMC article.
Gramene, a tool for grass genomics.
Ware DH, Jaiswal P, Ni J, Yap IV, Pan X, Clark KY, Teytelman L, Schmidt SC, Zhao W, Chang K, Cartinhour S, Stein LD, McCouch SR. Ware DH, et al. Among authors: stein ld. Plant Physiol. 2002 Dec;130(4):1606-13. doi: 10.1104/pp.015248. Plant Physiol. 2002. PMID: 12481044 Free PMC article. Review.
WormBase: a cross-species database for comparative genomics.
Harris TW, Lee R, Schwarz E, Bradnam K, Lawson D, Chen W, Blasier D, Kenny E, Cunningham F, Kishore R, Chan J, Muller HM, Petcherski A, Thorisson G, Day A, Bieri T, Rogers A, Chen CK, Spieth J, Sternberg P, Durbin R, Stein LD. Harris TW, et al. Among authors: stein ld. Nucleic Acids Res. 2003 Jan 1;31(1):133-7. doi: 10.1093/nar/gkg053. Nucleic Acids Res. 2003. PMID: 12519966 Free PMC article.
The genome sequence of Caenorhabditis briggsae: a platform for comparative genomics.
Stein LD, Bao Z, Blasiar D, Blumenthal T, Brent MR, Chen N, Chinwalla A, Clarke L, Clee C, Coghlan A, Coulson A, D'Eustachio P, Fitch DH, Fulton LA, Fulton RE, Griffiths-Jones S, Harris TW, Hillier LW, Kamath R, Kuwabara PE, Mardis ER, Marra MA, Miner TL, Minx P, Mullikin JC, Plumb RW, Rogers J, Schein JE, Sohrmann M, Spieth J, Stajich JE, Wei C, Willey D, Wilson RK, Durbin R, Waterston RH. Stein LD, et al. PLoS Biol. 2003 Nov;1(2):E45. doi: 10.1371/journal.pbio.0000045. Epub 2003 Nov 17. PLoS Biol. 2003. PMID: 14624247 Free PMC article.
WormBase: a multi-species resource for nematode biology and genomics.
Harris TW, Chen N, Cunningham F, Tello-Ruiz M, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Chan J, Chen CK, Chen WJ, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD. Harris TW, et al. Among authors: stein ld. Nucleic Acids Res. 2004 Jan 1;32(Database issue):D411-7. doi: 10.1093/nar/gkh066. Nucleic Acids Res. 2004. PMID: 14681445 Free PMC article.
The Genome Knowledgebase: a resource for biologists and bioinformaticists.
Joshi-Tope G, Vastrik I, Gopinath GR, Matthews L, Schmidt E, Gillespie M, D'Eustachio P, Jassal B, Lewis S, Wu G, Birney E, Stein L. Joshi-Tope G, et al. Cold Spring Harb Symp Quant Biol. 2003;68:237-43. doi: 10.1101/sqb.2003.68.237. Cold Spring Harb Symp Quant Biol. 2003. PMID: 15338623 No abstract available.
WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.
Chen N, Harris TW, Antoshechkin I, Bastiani C, Bieri T, Blasiar D, Bradnam K, Canaran P, Chan J, Chen CK, Chen WJ, Cunningham F, Davis P, Kenny E, Kishore R, Lawson D, Lee R, Muller HM, Nakamura C, Pai S, Ozersky P, Petcherski A, Rogers A, Sabo A, Schwarz EM, Van Auken K, Wang Q, Durbin R, Spieth J, Sternberg PW, Stein LD. Chen N, et al. Among authors: stein ld. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D383-9. doi: 10.1093/nar/gki066. Nucleic Acids Res. 2005. PMID: 15608221 Free PMC article.
Reactome: a knowledgebase of biological pathways.
Joshi-Tope G, Gillespie M, Vastrik I, D'Eustachio P, Schmidt E, de Bono B, Jassal B, Gopinath GR, Wu GR, Matthews L, Lewis S, Birney E, Stein L. Joshi-Tope G, et al. Nucleic Acids Res. 2005 Jan 1;33(Database issue):D428-32. doi: 10.1093/nar/gki072. Nucleic Acids Res. 2005. PMID: 15608231 Free PMC article.
240 results