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Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE. McIntyre ABR, et al. Among authors: subramanian p. Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7. Genome Biol. 2017. PMID: 28934964 Free PMC article.
Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE. McIntyre ABR, et al. Among authors: subramanian p. Genome Biol. 2019 Apr 5;20(1):72. doi: 10.1186/s13059-019-1687-2. Genome Biol. 2019. PMID: 30953547 Free PMC article.
The microbiomes of blowflies and houseflies as bacterial transmission reservoirs.
Junqueira ACM, Ratan A, Acerbi E, Drautz-Moses DI, Premkrishnan BNV, Costea PI, Linz B, Purbojati RW, Paulo DF, Gaultier NE, Subramanian P, Hasan NA, Colwell RR, Bork P, Azeredo-Espin AML, Bryant DA, Schuster SC. Junqueira ACM, et al. Among authors: subramanian p. Sci Rep. 2017 Nov 24;7(1):16324. doi: 10.1038/s41598-017-16353-x. Sci Rep. 2017. PMID: 29176730 Free PMC article.
Enrichment dynamics of Listeria monocytogenes and the associated microbiome from naturally contaminated ice cream linked to a listeriosis outbreak.
Ottesen A, Ramachandran P, Reed E, White JR, Hasan N, Subramanian P, Ryan G, Jarvis K, Grim C, Daquiqan N, Hanes D, Allard M, Colwell R, Brown E, Chen Y. Ottesen A, et al. Among authors: subramanian p. BMC Microbiol. 2016 Nov 16;16(1):275. doi: 10.1186/s12866-016-0894-1. BMC Microbiol. 2016. PMID: 27852235 Free PMC article.
Comparison of Infant Gut and Skin Microbiota, Resistome and Virulome Between Neonatal Intensive Care Unit (NICU) Environments.
Hourigan SK, Subramanian P, Hasan NA, Ta A, Klein E, Chettout N, Huddleston K, Deopujari V, Levy S, Baveja R, Clemency NC, Baker RL, Niederhuber JE, Colwell RR. Hourigan SK, et al. Among authors: subramanian p. Front Microbiol. 2018 Jun 25;9:1361. doi: 10.3389/fmicb.2018.01361. eCollection 2018. Front Microbiol. 2018. PMID: 29988506 Free PMC article.
A whole-genome assembly of the domestic cow, Bos taurus.
Zimin AV, Delcher AL, Florea L, Kelley DR, Schatz MC, Puiu D, Hanrahan F, Pertea G, Van Tassell CP, Sonstegard TS, Marçais G, Roberts M, Subramanian P, Yorke JA, Salzberg SL. Zimin AV, et al. Among authors: subramanian p. Genome Biol. 2009;10(4):R42. doi: 10.1186/gb-2009-10-4-r42. Epub 2009 Apr 24. Genome Biol. 2009. PMID: 19393038 Free PMC article.
Microbiome signatures of progression toward celiac disease onset in at-risk children in a longitudinal prospective cohort study.
Leonard MM, Valitutti F, Karathia H, Pujolassos M, Kenyon V, Fanelli B, Troisi J, Subramanian P, Camhi S, Colucci A, Serena G, Cucchiara S, Trovato CM, Malamisura B, Francavilla R, Elli L, Hasan NA, Zomorrodi AR, Colwell R, Fasano A; CD-GEMM Team. Leonard MM, et al. Among authors: subramanian p. Proc Natl Acad Sci U S A. 2021 Jul 20;118(29):e2020322118. doi: 10.1073/pnas.2020322118. Proc Natl Acad Sci U S A. 2021. PMID: 34253606 Free PMC article.
Multi-omics analysis reveals the influence of genetic and environmental risk factors on developing gut microbiota in infants at risk of celiac disease.
Leonard MM, Karathia H, Pujolassos M, Troisi J, Valitutti F, Subramanian P, Camhi S, Kenyon V, Colucci A, Serena G, Cucchiara S, Montuori M, Malamisura B, Francavilla R, Elli L, Fanelli B, Colwell R, Hasan N, Zomorrodi AR, Fasano A; CD-GEMM Team. Leonard MM, et al. Among authors: subramanian p. Microbiome. 2020 Sep 11;8(1):130. doi: 10.1186/s40168-020-00906-w. Microbiome. 2020. PMID: 32917289 Free PMC article.
783 results