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Page 1
Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE. McIntyre ABR, et al. Genome Biol. 2017 Sep 21;18(1):182. doi: 10.1186/s13059-017-1299-7. Genome Biol. 2017. PMID: 28934964 Free PMC article.
Correction to: Comprehensive benchmarking and ensemble approaches for metagenomic classifiers.
McIntyre ABR, Ounit R, Afshinnekoo E, Prill RJ, Hénaff E, Alexander N, Minot SS, Danko D, Foox J, Ahsanuddin S, Tighe S, Hasan NA, Subramanian P, Moffat K, Levy S, Lonardi S, Greenfield N, Colwell RR, Rosen GL, Mason CE. McIntyre ABR, et al. Genome Biol. 2019 Apr 5;20(1):72. doi: 10.1186/s13059-019-1687-2. Genome Biol. 2019. PMID: 30953547 Free PMC article.
Genomic Methods and Microbiological Technologies for Profiling Novel and Extreme Environments for the Extreme Microbiome Project (XMP).
Tighe S, Afshinnekoo E, Rock TM, McGrath K, Alexander N, McIntyre A, Ahsanuddin S, Bezdan D, Green SJ, Joye S, Stewart Johnson S, Baldwin DA, Bivens N, Ajami N, Carmical JR, Herriott IC, Colwell R, Donia M, Foox J, Greenfield N, Hunter T, Hoffman J, Hyman J, Jorgensen E, Krawczyk D, Lee J, Levy S, Garcia-Reyero N, Settles M, Thomas K, Gómez F, Schriml L, Kyrpides N, Zaikova E, Penterman J, Mason CE. Tighe S, et al. J Biomol Tech. 2017 Apr;28(1):31-39. doi: 10.7171/jbt.17-2801-004. Epub 2017 Mar 10. J Biomol Tech. 2017. PMID: 28337070 Free PMC article.
Clinical Genomics: Challenges and Opportunities.
Vijay P, McIntyre AB, Mason CE, Greenfield JP, Li S. Vijay P, et al. Crit Rev Eukaryot Gene Expr. 2016;26(2):97-113. doi: 10.1615/CritRevEukaryotGeneExpr.2016015724. Crit Rev Eukaryot Gene Expr. 2016. PMID: 27480773 Free PMC article. Review.
Nanopore sequencing in microgravity.
McIntyre ABR, Rizzardi L, Yu AM, Alexander N, Rosen GL, Botkin DJ, Stahl SE, John KK, Castro-Wallace SL, McGrath K, Burton AS, Feinberg AP, Mason CE. McIntyre ABR, et al. NPJ Microgravity. 2016 Oct 20;2:16035. doi: 10.1038/npjmgrav.2016.35. eCollection 2016. NPJ Microgravity. 2016. PMID: 28725742 Free PMC article.
Extensive sequencing of seven human genomes to characterize benchmark reference materials.
Zook JM, Catoe D, McDaniel J, Vang L, Spies N, Sidow A, Weng Z, Liu Y, Mason CE, Alexander N, Henaff E, McIntyre AB, Chandramohan D, Chen F, Jaeger E, Moshrefi A, Pham K, Stedman W, Liang T, Saghbini M, Dzakula Z, Hastie A, Cao H, Deikus G, Schadt E, Sebra R, Bashir A, Truty RM, Chang CC, Gulbahce N, Zhao K, Ghosh S, Hyland F, Fu Y, Chaisson M, Xiao C, Trow J, Sherry ST, Zaranek AW, Ball M, Bobe J, Estep P, Church GM, Marks P, Kyriazopoulou-Panagiotopoulou S, Zheng GX, Schnall-Levin M, Ordonez HS, Mudivarti PA, Giorda K, Sheng Y, Rypdal KB, Salit M. Zook JM, et al. Sci Data. 2016 Jun 7;3:160025. doi: 10.1038/sdata.2016.25. Sci Data. 2016. PMID: 27271295 Free PMC article.
Nanopore DNA Sequencing and Genome Assembly on the International Space Station.
Castro-Wallace SL, Chiu CY, John KK, Stahl SE, Rubins KH, McIntyre ABR, Dworkin JP, Lupisella ML, Smith DJ, Botkin DJ, Stephenson TA, Juul S, Turner DJ, Izquierdo F, Federman S, Stryke D, Somasekar S, Alexander N, Yu G, Mason CE, Burton AS. Castro-Wallace SL, et al. Among authors: mcintyre abr. Sci Rep. 2017 Dec 21;7(1):18022. doi: 10.1038/s41598-017-18364-0. Sci Rep. 2017. PMID: 29269933 Free PMC article.
Limits in the detection of m6A changes using MeRIP/m6A-seq.
McIntyre ABR, Gokhale NS, Cerchietti L, Jaffrey SR, Horner SM, Mason CE. McIntyre ABR, et al. Sci Rep. 2020 Apr 20;10(1):6590. doi: 10.1038/s41598-020-63355-3. Sci Rep. 2020. PMID: 32313079 Free PMC article.
17 results