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Page 1
Integrative deep models for alternative splicing.
Jha A, Gazzara MR, Barash Y. Jha A, et al. Among authors: barash y. Bioinformatics. 2017 Jul 15;33(14):i274-i282. doi: 10.1093/bioinformatics/btx268. Bioinformatics. 2017. PMID: 28882000 Free PMC article.
Alternative splicing of its 5'-UTR limits CD20 mRNA translation and enables resistance to CD20-directed immunotherapies.
Ang Z, Paruzzo L, Hayer KE, Schmidt C, Torres Diz M, Xu F, Zankharia U, Zhang Y, Soldan S, Zheng S, Falkenstein CD, Loftus JP, Yang SY, Asnani M, King Sainos P, Pillai V, Chong E, Li MM, Tasian SK, Barash Y, Lieberman PM, Ruella M, Schuster SJ, Thomas-Tikhonenko A. Ang Z, et al. Among authors: barash y. bioRxiv [Preprint]. 2023 Aug 16:2023.02.19.529123. doi: 10.1101/2023.02.19.529123. bioRxiv. 2023. Update in: Blood. 2023 Nov 16;142(20):1724-1739. doi: 10.1182/blood.2023020400. PMID: 37645778 Free PMC article. Updated. Preprint.
An Alternatively Spliced Gain-of-Function NT5C2 Isoform Contributes to Chemoresistance in Acute Lymphoblastic Leukemia.
Torres-Diz M, Reglero C, Falkenstein CD, Castro A, Hayer KE, Radens CM, Quesnel-Vallières M, Ang Z, Sehgal P, Li MM, Barash Y, Tasian SK, Ferrando A, Thomas-Tikhonenko A. Torres-Diz M, et al. Among authors: barash y. bioRxiv [Preprint]. 2024 Jul 22:2023.09.14.557413. doi: 10.1101/2023.09.14.557413. bioRxiv. 2024. Update in: Cancer Res. 2024 Oct 15;84(20):3327-3336. doi: 10.1158/0008-5472.CAN-23-3804. PMID: 39091882 Free PMC article. Updated. Preprint.
Deciphering the splicing code.
Barash Y, Calarco JA, Gao W, Pan Q, Wang X, Shai O, Blencowe BJ, Frey BJ. Barash Y, et al. Nature. 2010 May 6;465(7294):53-9. doi: 10.1038/nature09000. Nature. 2010. PMID: 20445623
Model-based detection of alternative splicing signals.
Barash Y, Blencowe BJ, Frey BJ. Barash Y, et al. Bioinformatics. 2010 Jun 15;26(12):i325-33. doi: 10.1093/bioinformatics/btq200. Bioinformatics. 2010. PMID: 20529924 Free PMC article.
Predicting alternative splicing.
Barash Y, Garcia JV. Barash Y, et al. Methods Mol Biol. 2014;1126:411-23. doi: 10.1007/978-1-62703-980-2_28. Methods Mol Biol. 2014. PMID: 24549679
Splicing code modeling.
Barash Y, Vaquero-Garcia J. Barash Y, et al. Adv Exp Med Biol. 2014;825:451-66. doi: 10.1007/978-1-4939-1221-6_13. Adv Exp Med Biol. 2014. PMID: 25201114 Review.
164 results