Orenstein Y - Search Results

1

Improving the performance of minimizers and winnowing schemes.

Marçais G, Pellow D, Bork D, Orenstein Y, Shamir R, Kingsford C. Marçais G, et al. Among authors: orenstein y. Bioinformatics. 2017 Jul 15;33(14):i110-i117. doi: 10.1093/bioinformatics/btx235. Bioinformatics. 2017. PMID: 28881970 Free PMC article.

2

Assessment of algorithms for inferring positional weight matrix motifs of transcription factor binding sites using protein binding microarray data.

Orenstein Y, Linhart C, Shamir R. Orenstein Y, et al. PLoS One. 2012;7(9):e46145. doi: 10.1371/journal.pone.0046145. Epub 2012 Sep 28. PLoS One. 2012. PMID: 23029415 Free PMC article.

3

RAP: accurate and fast motif finding based on protein-binding microarray data.

Orenstein Y, Mick E, Shamir R. Orenstein Y, et al. J Comput Biol. 2013 May;20(5):375-82. doi: 10.1089/cmb.2012.0253. Epub 2013 Mar 6. J Comput Biol. 2013. PMID: 23464877 Free PMC article.

4

Design of shortest double-stranded DNA sequences covering all k-mers with applications to protein-binding microarrays and synthetic enhancers.

Orenstein Y, Shamir R. Orenstein Y, et al. Bioinformatics. 2013 Jul 1;29(13):i71-9. doi: 10.1093/bioinformatics/btt230. Bioinformatics. 2013. PMID: 23813011 Free PMC article.

5

A comparative analysis of transcription factor binding models learned from PBM, HT-SELEX and ChIP data.

Orenstein Y, Shamir R. Orenstein Y, et al. Nucleic Acids Res. 2014 Apr;42(8):e63. doi: 10.1093/nar/gku117. Epub 2014 Feb 5. Nucleic Acids Res. 2014. PMID: 24500199 Free PMC article.

6

Drosophila TRF2 is a preferential core promoter regulator.

Kedmi A, Zehavi Y, Glick Y, Orenstein Y, Ideses D, Wachtel C, Doniger T, Waldman Ben-Asher H, Muster N, Thompson J, Anderson S, Avrahami D, Yates JR 3rd, Shamir R, Gerber D, Juven-Gershon T. Kedmi A, et al. Among authors: orenstein y. Genes Dev. 2014 Oct 1;28(19):2163-74. doi: 10.1101/gad.245670.114. Epub 2014 Sep 15. Genes Dev. 2014. PMID: 25223897 Free PMC article.

7

Design of shortest double-stranded DNA sequences covering all k-mers with applications to protein-binding microarrays and synthetic enhancers.

Orenstein Y, Shamir R. Orenstein Y, et al. Bioinformatics. 2015 Apr 15;31(8):1340. doi: 10.1093/bioinformatics/btv084. Epub 2015 Mar 24. Bioinformatics. 2015. PMID: 25805721 Free PMC article. No abstract available.

8

ElemeNT: a computational tool for detecting core promoter elements.

Sloutskin A, Danino YM, Orenstein Y, Zehavi Y, Doniger T, Shamir R, Juven-Gershon T. Sloutskin A, et al. Among authors: orenstein y. Transcription. 2015;6(3):41-50. doi: 10.1080/21541264.2015.1067286. Transcription. 2015. PMID: 26226151 Free PMC article.

9

Integrated microfluidic approach for quantitative high-throughput measurements of transcription factor binding affinities.

Glick Y, Orenstein Y, Chen D, Avrahami D, Zor T, Shamir R, Gerber D. Glick Y, et al. Among authors: orenstein y. Nucleic Acids Res. 2016 Apr 7;44(6):e51. doi: 10.1093/nar/gkv1327. Epub 2015 Dec 3. Nucleic Acids Res. 2016. PMID: 26635393 Free PMC article.

10

RCK: accurate and efficient inference of sequence- and structure-based protein-RNA binding models from RNAcompete data.

Orenstein Y, Wang Y, Berger B. Orenstein Y, et al. Bioinformatics. 2016 Jun 15;32(12):i351-i359. doi: 10.1093/bioinformatics/btw259. Bioinformatics. 2016. PMID: 27307637 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

48 results

Search Page

Filters