Ficklin SP - Search Results

1

Discovering Condition-Specific Gene Co-Expression Patterns Using Gaussian Mixture Models: A Cancer Case Study.

Ficklin SP, Dunwoodie LJ, Poehlman WL, Watson C, Roche KE, Feltus FA. Ficklin SP, et al. Sci Rep. 2017 Aug 17;7(1):8617. doi: 10.1038/s41598-017-09094-4. Sci Rep. 2017. PMID: 28819158 Free PMC article.

2

The association of multiple interacting genes with specific phenotypes in rice using gene coexpression networks.

Ficklin SP, Luo F, Feltus FA. Ficklin SP, et al. Plant Physiol. 2010 Sep;154(1):13-24. doi: 10.1104/pp.110.159459. Epub 2010 Jul 28. Plant Physiol. 2010. PMID: 20668062 Free PMC article.

3

Gene coexpression network alignment and conservation of gene modules between two grass species: maize and rice.

Ficklin SP, Feltus FA. Ficklin SP, et al. Plant Physiol. 2011 Jul;156(3):1244-56. doi: 10.1104/pp.111.173047. Epub 2011 May 23. Plant Physiol. 2011. PMID: 21606319 Free PMC article.

4

Sequencing of a QTL-rich region of the Theobroma cacao genome using pooled BACs and the identification of trait specific candidate genes.

Feltus FA, Saski CA, Mockaitis K, Haiminen N, Parida L, Smith Z, Ford J, Staton ME, Ficklin SP, Blackmon BP, Cheng CH, Schnell RJ, Kuhn DN, Motamayor JC. Feltus FA, et al. Among authors: ficklin sp. BMC Genomics. 2011 Jul 27;12:379. doi: 10.1186/1471-2164-12-379. BMC Genomics. 2011. PMID: 21794110 Free PMC article.

5

Modes of gene duplication contribute differently to genetic novelty and redundancy, but show parallels across divergent angiosperms.

Wang Y, Wang X, Tang H, Tan X, Ficklin SP, Feltus FA, Paterson AH. Wang Y, et al. Among authors: ficklin sp. PLoS One. 2011;6(12):e28150. doi: 10.1371/journal.pone.0028150. Epub 2011 Dec 2. PLoS One. 2011. PMID: 22164235 Free PMC article.

6

Conserved non-coding regulatory signatures in Arabidopsis co-expressed gene modules.

Spangler JB, Ficklin SP, Luo F, Freeling M, Feltus FA. Spangler JB, et al. Among authors: ficklin sp. PLoS One. 2012;7(9):e45041. doi: 10.1371/journal.pone.0045041. Epub 2012 Sep 14. PLoS One. 2012. PMID: 23024789 Free PMC article.

7

Massive-scale gene co-expression network construction and robustness testing using random matrix theory.

Gibson SM, Ficklin SP, Isaacson S, Luo F, Feltus FA, Smith MC. Gibson SM, et al. Among authors: ficklin sp. PLoS One. 2013;8(2):e55871. doi: 10.1371/journal.pone.0055871. Epub 2013 Feb 7. PLoS One. 2013. PMID: 23409071 Free PMC article.

8

Maximizing capture of gene co-expression relationships through pre-clustering of input expression samples: an Arabidopsis case study.

Feltus FA, Ficklin SP, Gibson SM, Smith MC. Feltus FA, et al. Among authors: ficklin sp. BMC Syst Biol. 2013 Jun 5;7:44. doi: 10.1186/1752-0509-7-44. BMC Syst Biol. 2013. PMID: 23738693 Free PMC article.

9

A systems-genetics approach and data mining tool to assist in the discovery of genes underlying complex traits in Oryza sativa.

Ficklin SP, Feltus FA. Ficklin SP, et al. PLoS One. 2013 Jul 16;8(7):e68551. doi: 10.1371/journal.pone.0068551. Print 2013. PLoS One. 2013. PMID: 23874666 Free PMC article.

10

Tripal v1.1: a standards-based toolkit for construction of online genetic and genomic databases.

Sanderson LA, Ficklin SP, Cheng CH, Jung S, Feltus FA, Bett KE, Main D. Sanderson LA, et al. Among authors: ficklin sp. Database (Oxford). 2013 Oct 25;2013:bat075. doi: 10.1093/database/bat075. Print 2013. Database (Oxford). 2013. PMID: 24163125 Free PMC article.

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