Ray D - Search Results

1

Oncogenic Activation of the RNA Binding Protein NELFE and MYC Signaling in Hepatocellular Carcinoma.

Dang H, Takai A, Forgues M, Pomyen Y, Mou H, Xue W, Ray D, Ha KCH, Morris QD, Hughes TR, Wang XW. Dang H, et al. Among authors: ray d. Cancer Cell. 2017 Jul 10;32(1):101-114.e8. doi: 10.1016/j.ccell.2017.06.002. Cancer Cell. 2017. PMID: 28697339 Free PMC article.

2

Rapid and systematic analysis of the RNA recognition specificities of RNA-binding proteins.

Ray D, Kazan H, Chan ET, Peña Castillo L, Chaudhry S, Talukder S, Blencowe BJ, Morris Q, Hughes TR. Ray D, et al. Nat Biotechnol. 2009 Jul;27(7):667-70. doi: 10.1038/nbt.1550. Epub 2009 Jun 28. Nat Biotechnol. 2009. PMID: 19561594

3

RNAcontext: a new method for learning the sequence and structure binding preferences of RNA-binding proteins.

Kazan H, Ray D, Chan ET, Hughes TR, Morris Q. Kazan H, et al. Among authors: ray d. PLoS Comput Biol. 2010 Jul 1;6(7):e1000832. doi: 10.1371/journal.pcbi.1000832. PLoS Comput Biol. 2010. PMID: 20617199 Free PMC article.

4

Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays.

Stead MB, Marshburn S, Mohanty BK, Mitra J, Pena Castillo L, Ray D, van Bakel H, Hughes TR, Kushner SR. Stead MB, et al. Among authors: ray d. Nucleic Acids Res. 2011 Apr;39(8):3188-203. doi: 10.1093/nar/gkq1242. Epub 2010 Dec 11. Nucleic Acids Res. 2011. PMID: 21149258 Free PMC article.

5

A compendium of RNA-binding motifs for decoding gene regulation.

Ray D, Kazan H, Cook KB, Weirauch MT, Najafabadi HS, Li X, Gueroussov S, Albu M, Zheng H, Yang A, Na H, Irimia M, Matzat LH, Dale RK, Smith SA, Yarosh CA, Kelly SM, Nabet B, Mecenas D, Li W, Laishram RS, Qiao M, Lipshitz HD, Piano F, Corbett AH, Carstens RP, Frey BJ, Anderson RA, Lynch KW, Penalva LO, Lei EP, Fraser AG, Blencowe BJ, Morris QD, Hughes TR. Ray D, et al. Nature. 2013 Jul 11;499(7457):172-7. doi: 10.1038/nature12311. Nature. 2013. PMID: 23846655 Free PMC article.

6

Paralogs hnRNP L and hnRNP LL exhibit overlapping but distinct RNA binding constraints.

Smith SA, Ray D, Cook KB, Mallory MJ, Hughes TR, Lynch KW. Smith SA, et al. Among authors: ray d. PLoS One. 2013 Nov 11;8(11):e80701. doi: 10.1371/journal.pone.0080701. eCollection 2013. PLoS One. 2013. PMID: 24244709 Free PMC article.

7

Identifying mRNA sequence elements for target recognition by human Argonaute proteins.

Li J, Kim T, Nutiu R, Ray D, Hughes TR, Zhang Z. Li J, et al. Among authors: ray d. Genome Res. 2014 May;24(5):775-85. doi: 10.1101/gr.162230.113. Epub 2014 Mar 24. Genome Res. 2014. PMID: 24663241 Free PMC article.

8

A pair of RNA-binding proteins controls networks of splicing events contributing to specialization of neural cell types.

Norris AD, Gao S, Norris ML, Ray D, Ramani AK, Fraser AG, Morris Q, Hughes TR, Zhen M, Calarco JA. Norris AD, et al. Among authors: ray d. Mol Cell. 2014 Jun 19;54(6):946-959. doi: 10.1016/j.molcel.2014.05.004. Epub 2014 Jun 5. Mol Cell. 2014. PMID: 24910101 Free PMC article.

9

Brain tumor is a sequence-specific RNA-binding protein that directs maternal mRNA clearance during the Drosophila maternal-to-zygotic transition.

Laver JD, Li X, Ray D, Cook KB, Hahn NA, Nabeel-Shah S, Kekis M, Luo H, Marsolais AJ, Fung KY, Hughes TR, Westwood JT, Sidhu SS, Morris Q, Lipshitz HD, Smibert CA. Laver JD, et al. Among authors: ray d. Genome Biol. 2015 May 12;16(1):94. doi: 10.1186/s13059-015-0659-4. Genome Biol. 2015. PMID: 25962635 Free PMC article.

10

The Crystal Structure of the NHL Domain in Complex with RNA Reveals the Molecular Basis of Drosophila Brain-Tumor-Mediated Gene Regulation.

Loedige I, Jakob L, Treiber T, Ray D, Stotz M, Treiber N, Hennig J, Cook KB, Morris Q, Hughes TR, Engelmann JC, Krahn MP, Meister G. Loedige I, et al. Among authors: ray d. Cell Rep. 2015 Nov 10;13(6):1206-1220. doi: 10.1016/j.celrep.2015.09.068. Epub 2015 Oct 29. Cell Rep. 2015. PMID: 26527002 Free article.

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