Xu Q - Search Results

1

BRCA2, EGFR, and NTRK mutations in mismatch repair-deficient colorectal cancers with MSH2 or MLH1 mutations.

Deihimi S, Lev A, Slifker M, Shagisultanova E, Xu Q, Jung K, Vijayvergia N, Ross EA, Xiu J, Swensen J, Gatalica Z, Andrake M, Dunbrack RL, El-Deiry WS. Deihimi S, et al. Among authors: xu q. Oncotarget. 2017 Jun 20;8(25):39945-39962. doi: 10.18632/oncotarget.18098. Oncotarget. 2017. PMID: 28591715 Free PMC article.

2

ProtBuD: a database of biological unit structures of protein families and superfamilies.

Xu Q, Canutescu A, Obradovic Z, Dunbrack RL Jr. Xu Q, et al. Bioinformatics. 2006 Dec 1;22(23):2876-82. doi: 10.1093/bioinformatics/btl490. Epub 2006 Oct 2. Bioinformatics. 2006. PMID: 17018535

3

Statistical analysis of interface similarity in crystals of homologous proteins.

Xu Q, Canutescu AA, Wang G, Shapovalov M, Obradovic Z, Dunbrack RL Jr. Xu Q, et al. J Mol Biol. 2008 Aug 29;381(2):487-507. doi: 10.1016/j.jmb.2008.06.002. Epub 2008 Jun 7. J Mol Biol. 2008. PMID: 18599072 Free PMC article.

4

An unusually small dimer interface is observed in all available crystal structures of cytosolic sulfotransferases.

Weitzner B, Meehan T, Xu Q, Dunbrack RL Jr. Weitzner B, et al. Among authors: xu q. Proteins. 2009 May 1;75(2):289-95. doi: 10.1002/prot.22347. Proteins. 2009. PMID: 19173308 Free PMC article.

5

The protein common interface database (ProtCID)--a comprehensive database of interactions of homologous proteins in multiple crystal forms.

Xu Q, Dunbrack RL Jr. Xu Q, et al. Nucleic Acids Res. 2011 Jan;39(Database issue):D761-70. doi: 10.1093/nar/gkq1059. Epub 2010 Oct 29. Nucleic Acids Res. 2011. PMID: 21036862 Free PMC article.

6

Assignment of protein sequences to existing domain and family classification systems: Pfam and the PDB.

Xu Q, Dunbrack RL Jr. Xu Q, et al. Bioinformatics. 2012 Nov 1;28(21):2763-72. doi: 10.1093/bioinformatics/bts533. Epub 2012 Aug 31. Bioinformatics. 2012. PMID: 22942020 Free PMC article.

7

Prediction of phenotypes of missense mutations in human proteins from biological assemblies.

Wei Q, Xu Q, Dunbrack RL Jr. Wei Q, et al. Among authors: xu q. Proteins. 2013 Feb;81(2):199-213. doi: 10.1002/prot.24176. Epub 2012 Nov 5. Proteins. 2013. PMID: 22965855 Free PMC article.

8

BioAssemblyModeler (BAM): user-friendly homology modeling of protein homo- and heterooligomers.

Shapovalov MV, Wang Q, Xu Q, Andrake M, Dunbrack RL Jr. Shapovalov MV, et al. Among authors: xu q. PLoS One. 2014 Jun 12;9(6):e98309. doi: 10.1371/journal.pone.0098309. eCollection 2014. PLoS One. 2014. PMID: 24922057 Free PMC article.

9

PyIgClassify: a database of antibody CDR structural classifications.

Adolf-Bryfogle J, Xu Q, North B, Lehmann A, Dunbrack RL Jr. Adolf-Bryfogle J, et al. Among authors: xu q. Nucleic Acids Res. 2015 Jan;43(Database issue):D432-8. doi: 10.1093/nar/gku1106. Epub 2014 Nov 11. Nucleic Acids Res. 2015. PMID: 25392411 Free PMC article.

10

Identifying three-dimensional structures of autophosphorylation complexes in crystals of protein kinases.

Xu Q, Malecka KL, Fink L, Jordan EJ, Duffy E, Kolander S, Peterson JR, Dunbrack RL Jr. Xu Q, et al. Sci Signal. 2015 Dec 1;8(405):rs13. doi: 10.1126/scisignal.aaa6711. Sci Signal. 2015. PMID: 26628682 Free PMC article.

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