Xie C - Search Results

1

RiboTagger: fast and unbiased 16S/18S profiling using whole community shotgun metagenomic or metatranscriptome surveys.

Xie C, Goi CL, Huson DH, Little PF, Williams RB. Xie C, et al. BMC Bioinformatics. 2016 Dec 22;17(Suppl 19):508. doi: 10.1186/s12859-016-1378-x. BMC Bioinformatics. 2016. PMID: 28155666 Free PMC article.

2

A poor man's BLASTX--high-throughput metagenomic protein database search using PAUDA.

Huson DH, Xie C. Huson DH, et al. Among authors: xie c. Bioinformatics. 2014 Jan 1;30(1):38-9. doi: 10.1093/bioinformatics/btt254. Epub 2013 May 7. Bioinformatics. 2014. PMID: 23658416 Free PMC article.

3

Fast and sensitive protein alignment using DIAMOND.

Buchfink B, Xie C, Huson DH. Buchfink B, et al. Among authors: xie c. Nat Methods. 2015 Jan;12(1):59-60. doi: 10.1038/nmeth.3176. Epub 2014 Nov 17. Nat Methods. 2015. PMID: 25402007

4

Fast and simple protein-alignment-guided assembly of orthologous gene families from microbiome sequencing reads.

Huson DH, Tappu R, Bazinet AL, Xie C, Cummings MP, Nieselt K, Williams R. Huson DH, et al. Among authors: xie c. Microbiome. 2017 Jan 25;5(1):11. doi: 10.1186/s40168-017-0233-2. Microbiome. 2017. PMID: 28122610 Free PMC article.

5

Primer-free FISH probes from metagenomics/metatranscriptomics data permit the study of uncharacterised taxa in complex microbial communities.

Tan SM, Yung PYM, Hutchinson PE, Xie C, Teo GH, Ismail MH, Drautz-Moses DI, Little PFR, Williams RBH, Cohen Y. Tan SM, et al. Among authors: xie c. NPJ Biofilms Microbiomes. 2019 Jun 25;5(1):17. doi: 10.1038/s41522-019-0090-9. eCollection 2019. NPJ Biofilms Microbiomes. 2019. PMID: 31263569 Free PMC article.

6

Cell-type and transcription factor specific enrichment of transcriptional cofactor motifs in ENCODE ChIP-seq data.

Goi C, Little P, Xie C. Goi C, et al. Among authors: xie c. BMC Genomics. 2013;14 Suppl 5(Suppl 5):S2. doi: 10.1186/1471-2164-14-S5-S2. Epub 2013 Oct 16. BMC Genomics. 2013. PMID: 24564528 Free PMC article.

7

Metagenomics Reveals the Influence of Land Use and Rain on the Benthic Microbial Communities in a Tropical Urban Waterway.

Saxena G, Mitra S, Marzinelli EM, Xie C, Wei TJ, Steinberg PD, Williams RBH, Kjelleberg S, Lauro FM, Swarup S. Saxena G, et al. Among authors: xie c. mSystems. 2018 Jun 5;3(3):e00136-17. doi: 10.1128/mSystems.00136-17. eCollection 2018 May-Jun. mSystems. 2018. PMID: 29896568 Free PMC article.

8

Integrative microbial community analysis reveals full-scale enhanced biological phosphorus removal under tropical conditions.

Law Y, Kirkegaard RH, Cokro AA, Liu X, Arumugam K, Xie C, Stokholm-Bjerregaard M, Drautz-Moses DI, Nielsen PH, Wuertz S, Williams RB. Law Y, et al. Among authors: xie c. Sci Rep. 2016 May 19;6:25719. doi: 10.1038/srep25719. Sci Rep. 2016. PMID: 27193869 Free PMC article.

9

Spatially extensive microbial biogeography of the Indian Ocean provides insights into the unique community structure of a pristine coral atoll.

Jeffries TC, Ostrowski M, Williams RB, Xie C, Jensen RM, Grzymski JJ, Senstius SJ, Givskov M, Hoeke R, Philip GK, Neches RY, Drautz-Moses DI, Chénard C, Paulsen IT, Lauro FM. Jeffries TC, et al. Among authors: xie c. Sci Rep. 2015 Oct 20;5:15383. doi: 10.1038/srep15383. Sci Rep. 2015. PMID: 26481089 Free PMC article.

10

The role of quorum sensing signalling in EPS production and the assembly of a sludge community into aerobic granules.

Tan CH, Koh KS, Xie C, Tay M, Zhou Y, Williams R, Ng WJ, Rice SA, Kjelleberg S. Tan CH, et al. Among authors: xie c. ISME J. 2014 Jun;8(6):1186-97. doi: 10.1038/ismej.2013.240. Epub 2014 Jan 16. ISME J. 2014. PMID: 24430488 Free PMC article.

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