Mahfouz A - Search Results

1

BrainScope: interactive visual exploration of the spatial and temporal human brain transcriptome.

Huisman SMH, van Lew B, Mahfouz A, Pezzotti N, Höllt T, Michielsen L, Vilanova A, Reinders MJT, Lelieveldt BPF. Huisman SMH, et al. Among authors: mahfouz a. Nucleic Acids Res. 2017 Jun 2;45(10):e83. doi: 10.1093/nar/gkx046. Nucleic Acids Res. 2017. PMID: 28132031 Free PMC article.

2

Visualizing the spatial gene expression organization in the brain through non-linear similarity embeddings.

Mahfouz A, van de Giessen M, van der Maaten L, Huisman S, Reinders M, Hawrylycz MJ, Lelieveldt BP. Mahfouz A, et al. Methods. 2015 Feb;73:79-89. doi: 10.1016/j.ymeth.2014.10.004. Epub 2014 Oct 16. Methods. 2015. PMID: 25449901 Free article.

3

Hi-C Chromatin Interaction Networks Predict Co-expression in the Mouse Cortex.

Babaei S, Mahfouz A, Hulsman M, Lelieveldt BP, de Ridder J, Reinders M. Babaei S, et al. Among authors: mahfouz a. PLoS Comput Biol. 2015 May 12;11(5):e1004221. doi: 10.1371/journal.pcbi.1004221. eCollection 2015 May. PLoS Comput Biol. 2015. PMID: 25965262 Free PMC article.

4

Shared Pathways Among Autism Candidate Genes Determined by Co-expression Network Analysis of the Developing Human Brain Transcriptome.

Mahfouz A, Ziats MN, Rennert OM, Lelieveldt BP, Reinders MJ. Mahfouz A, et al. J Mol Neurosci. 2015 Dec;57(4):580-94. doi: 10.1007/s12031-015-0641-3. Epub 2015 Sep 23. J Mol Neurosci. 2015. PMID: 26399424 Free PMC article.

5

Genome-wide coexpression of steroid receptors in the mouse brain: Identifying signaling pathways and functionally coordinated regions.

Mahfouz A, Lelieveldt BP, Grefhorst A, van Weert LT, Mol IM, Sips HC, van den Heuvel JK, Datson NA, Visser JA, Reinders MJ, Meijer OC. Mahfouz A, et al. Proc Natl Acad Sci U S A. 2016 Mar 8;113(10):2738-43. doi: 10.1073/pnas.1520376113. Epub 2016 Jan 25. Proc Natl Acad Sci U S A. 2016. PMID: 26811448 Free PMC article.

6

Gene co-expression analysis identifies brain regions and cell types involved in migraine pathophysiology: a GWAS-based study using the Allen Human Brain Atlas.

Eising E, Huisman SMH, Mahfouz A, Vijfhuizen LS, Anttila V, Winsvold BS, Kurth T, Ikram MA, Freilinger T, Kaprio J, Boomsma DI, van Duijn CM, Järvelin MR, Zwart JA, Quaye L, Strachan DP, Kubisch C, Dichgans M, Davey Smith G, Stefansson K, Palotie A, Chasman DI, Ferrari MD, Terwindt GM, de Vries B, Nyholt DR, Lelieveldt BPF, van den Maagdenberg AMJM, Reinders MJT. Eising E, et al. Among authors: mahfouz a. Hum Genet. 2016 Apr;135(4):425-439. doi: 10.1007/s00439-016-1638-x. Epub 2016 Feb 22. Hum Genet. 2016. PMID: 26899160 Free PMC article.

7

Cortical Spreading Depression Causes Unique Dysregulation of Inflammatory Pathways in a Transgenic Mouse Model of Migraine.

Eising E, Shyti R, 't Hoen PAC, Vijfhuizen LS, Huisman SMH, Broos LAM, Mahfouz A, Reinders MJT, Ferrari MD, Tolner EA, de Vries B, van den Maagdenberg AMJM. Eising E, et al. Among authors: mahfouz a. Mol Neurobiol. 2017 May;54(4):2986-2996. doi: 10.1007/s12035-015-9681-5. Epub 2016 Mar 31. Mol Neurobiol. 2017. PMID: 27032388 Free PMC article.

8

Pan-cancer subtyping in a 2D-map shows substructures that are driven by specific combinations of molecular characteristics.

Taskesen E, Huisman SM, Mahfouz A, Krijthe JH, de Ridder J, van de Stolpe A, van den Akker E, Verheagh W, Reinders MJ. Taskesen E, et al. Among authors: mahfouz a. Sci Rep. 2016 Apr 25;6:24949. doi: 10.1038/srep24949. Sci Rep. 2016. PMID: 27109935 Free PMC article.

9

Continuous infusion of manganese improves contrast and reduces side effects in manganese-enhanced magnetic resonance imaging studies.

Poole DS, Doorenweerd N, Plomp JJ, Mahfouz A, Reinders MJT, van der Weerd L. Poole DS, et al. Among authors: mahfouz a. Neuroimage. 2017 Feb 15;147:1-9. doi: 10.1016/j.neuroimage.2016.09.030. Epub 2016 Oct 21. Neuroimage. 2017. PMID: 27777173

10

Brain transcriptome atlases: a computational perspective.

Mahfouz A, Huisman SMH, Lelieveldt BPF, Reinders MJT. Mahfouz A, et al. Brain Struct Funct. 2017 May;222(4):1557-1580. doi: 10.1007/s00429-016-1338-2. Epub 2016 Dec 1. Brain Struct Funct. 2017. PMID: 27909802 Free PMC article. Review.

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