Tress ML - Search Results

1

Extreme genomic erosion after recurrent demographic bottlenecks in the highly endangered Iberian lynx.

Abascal F, Corvelo A, Cruz F, Villanueva-Cañas JL, Vlasova A, Marcet-Houben M, Martínez-Cruz B, Cheng JY, Prieto P, Quesada V, Quilez J, Li G, García F, Rubio-Camarillo M, Frias L, Ribeca P, Capella-Gutiérrez S, Rodríguez JM, Câmara F, Lowy E, Cozzuto L, Erb I, Tress ML, Rodriguez-Ales JL, Ruiz-Orera J, Reverter F, Casas-Marce M, Soriano L, Arango JR, Derdak S, Galán B, Blanc J, Gut M, Lorente-Galdos B, Andrés-Nieto M, López-Otín C, Valencia A, Gut I, García JL, Guigó R, Murphy WJ, Ruiz-Herrera A, Marques-Bonet T, Roma G, Notredame C, Mailund T, Albà MM, Gabaldón T, Alioto T, Godoy JA. Abascal F, et al. Among authors: tress ml. Genome Biol. 2016 Dec 14;17(1):251. doi: 10.1186/s13059-016-1090-1. Genome Biol. 2016. PMID: 27964752 Free PMC article.

2

Predicting reliable regions in protein alignments from sequence profiles.

Tress ML, Jones D, Valencia A. Tress ML, et al. J Mol Biol. 2003 Jul 18;330(4):705-18. doi: 10.1016/s0022-2836(03)00622-3. J Mol Biol. 2003. PMID: 12850141

3

SQUARE--determining reliable regions in sequence alignments.

Tress ML, Graña O, Valencia A. Tress ML, et al. Bioinformatics. 2004 Apr 12;20(6):974-5. doi: 10.1093/bioinformatics/bth032. Epub 2004 Feb 5. Bioinformatics. 2004. PMID: 14764569

4

An analysis of the Sargasso Sea resource and the consequences for database composition.

Tress ML, Cozzetto D, Tramontano A, Valencia A. Tress ML, et al. BMC Bioinformatics. 2006 Apr 19;7:213. doi: 10.1186/1471-2105-7-213. BMC Bioinformatics. 2006. PMID: 16623953 Free PMC article.

5

FireDB--a database of functionally important residues from proteins of known structure.

Lopez G, Valencia A, Tress M. Lopez G, et al. Nucleic Acids Res. 2007 Jan;35(Database issue):D219-23. doi: 10.1093/nar/gkl897. Epub 2006 Nov 28. Nucleic Acids Res. 2007. PMID: 17132832 Free PMC article.

6

firestar--prediction of functionally important residues using structural templates and alignment reliability.

López G, Valencia A, Tress ML. López G, et al. Among authors: tress ml. Nucleic Acids Res. 2007 Jul;35(Web Server issue):W573-7. doi: 10.1093/nar/gkm297. Epub 2007 Jun 21. Nucleic Acids Res. 2007. PMID: 17584799 Free PMC article.

7

Assessment of predictions submitted for the CASP7 function prediction category.

López G, Rojas A, Tress M, Valencia A. López G, et al. Proteins. 2007;69 Suppl 8:165-74. doi: 10.1002/prot.21651. Proteins. 2007. PMID: 17654548

8

Assessment of intramolecular contact predictions for CASP7.

Izarzugaza JM, Graña O, Tress ML, Valencia A, Clarke ND. Izarzugaza JM, et al. Among authors: tress ml. Proteins. 2007;69 Suppl 8:152-8. doi: 10.1002/prot.21637. Proteins. 2007. PMID: 17671976

9

Determination and validation of principal gene products.

Tress ML, Wesselink JJ, Frankish A, López G, Goldman N, Löytynoja A, Massingham T, Pardi F, Whelan S, Harrow J, Valencia A. Tress ML, et al. Bioinformatics. 2008 Jan 1;24(1):11-7. doi: 10.1093/bioinformatics/btm547. Epub 2007 Nov 15. Bioinformatics. 2008. PMID: 18006548 Free PMC article.

10

Proteomics studies confirm the presence of alternative protein isoforms on a large scale.

Tress ML, Bodenmiller B, Aebersold R, Valencia A. Tress ML, et al. Genome Biol. 2008;9(11):R162. doi: 10.1186/gb-2008-9-11-r162. Epub 2008 Nov 18. Genome Biol. 2008. PMID: 19017398 Free PMC article.

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