Wong WC - Search Results

1

xHMMER3x2: Utilizing HMMER3's speed and HMMER2's sensitivity and specificity in the glocal alignment mode for improved large-scale protein domain annotation.

Yap CK, Eisenhaber B, Eisenhaber F, Wong WC. Yap CK, et al. Among authors: wong wc. Biol Direct. 2016 Nov 29;11(1):63. doi: 10.1186/s13062-016-0163-0. Biol Direct. 2016. PMID: 27894340 Free PMC article.

2

On the necessity of different statistical treatment for Illumina BeadChip and Affymetrix GeneChip data and its significance for biological interpretation.

Wong WC, Loh M, Eisenhaber F. Wong WC, et al. Biol Direct. 2008 Jun 3;3:23. doi: 10.1186/1745-6150-3-23. Biol Direct. 2008. PMID: 18522715 Free PMC article.

3

More than 1,001 problems with protein domain databases: transmembrane regions, signal peptides and the issue of sequence homology.

Wong WC, Maurer-Stroh S, Eisenhaber F. Wong WC, et al. PLoS Comput Biol. 2010 Jul 29;6(7):e1000867. doi: 10.1371/journal.pcbi.1000867. PLoS Comput Biol. 2010. PMID: 20686689 Free PMC article.

4

The Janus-faced E-values of HMMER2: extreme value distribution or logistic function?

Wong WC, Maurer-Stroh S, Eisenhaber F. Wong WC, et al. J Bioinform Comput Biol. 2011 Feb;9(1):179-206. J Bioinform Comput Biol. 2011. PMID: 21328712

5

Not all transmembrane helices are born equal: Towards the extension of the sequence homology concept to membrane proteins.

Wong WC, Maurer-Stroh S, Eisenhaber F. Wong WC, et al. Biol Direct. 2011 Oct 25;6:57. doi: 10.1186/1745-6150-6-57. Biol Direct. 2011. PMID: 22024092 Free PMC article.

6

dissectHMMER: a HMMER-based score dissection framework that statistically evaluates fold-critical sequence segments for domain fold similarity.

Wong WC, Yap CK, Eisenhaber B, Eisenhaber F. Wong WC, et al. Biol Direct. 2015 Aug 1;10:39. doi: 10.1186/s13062-015-0068-3. Biol Direct. 2015. PMID: 26228544 Free PMC article.

7

The Recipe for Protein Sequence-Based Function Prediction and Its Implementation in the ANNOTATOR Software Environment.

Eisenhaber B, Kuchibhatla D, Sherman W, Sirota FL, Berezovsky IN, Wong WC, Eisenhaber F. Eisenhaber B, et al. Among authors: wong wc. Methods Mol Biol. 2016;1415:477-506. doi: 10.1007/978-1-4939-3572-7_25. Methods Mol Biol. 2016. PMID: 27115649

8

Charged residues next to transmembrane regions revisited: "Positive-inside rule" is complemented by the "negative inside depletion/outside enrichment rule".

Baker JA, Wong WC, Eisenhaber B, Warwicker J, Eisenhaber F. Baker JA, et al. Among authors: wong wc. BMC Biol. 2017 Jul 24;15(1):66. doi: 10.1186/s12915-017-0404-4. BMC Biol. 2017. PMID: 28738801 Free PMC article.

9

Finite-size effects in transcript sequencing count distribution: its power-law correction necessarily precedes downstream normalization and comparative analysis.

Wong WC, Ng HK, Tantoso E, Soong R, Eisenhaber F. Wong WC, et al. Biol Direct. 2018 Feb 12;13(1):2. doi: 10.1186/s13062-018-0204-y. Biol Direct. 2018. PMID: 29433547 Free PMC article.

10

ANNIE: integrated de novo protein sequence annotation.

Ooi HS, Kwo CY, Wildpaner M, Sirota FL, Eisenhaber B, Maurer-Stroh S, Wong WC, Schleiffer A, Eisenhaber F, Schneider G. Ooi HS, et al. Among authors: wong wc. Nucleic Acids Res. 2009 Jul;37(Web Server issue):W435-40. doi: 10.1093/nar/gkp254. Epub 2009 Apr 23. Nucleic Acids Res. 2009. PMID: 19389726 Free PMC article.

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