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The role of whole genome sequencing in antimicrobial susceptibility testing of bacteria: report from the EUCAST Subcommittee.
Ellington MJ, Ekelund O, Aarestrup FM, Canton R, Doumith M, Giske C, Grundman H, Hasman H, Holden MTG, Hopkins KL, Iredell J, Kahlmeter G, Köser CU, MacGowan A, Mevius D, Mulvey M, Naas T, Peto T, Rolain JM, Samuelsen Ø, Woodford N. Ellington MJ, et al. Among authors: koser cu. Clin Microbiol Infect. 2017 Jan;23(1):2-22. doi: 10.1016/j.cmi.2016.11.012. Epub 2016 Nov 23. Clin Microbiol Infect. 2017. PMID: 27890457 Free article. Review.
Rapid whole-genome sequencing for investigation of a neonatal MRSA outbreak.
Köser CU, Holden MT, Ellington MJ, Cartwright EJ, Brown NM, Ogilvy-Stuart AL, Hsu LY, Chewapreecha C, Croucher NJ, Harris SR, Sanders M, Enright MC, Dougan G, Bentley SD, Parkhill J, Fraser LJ, Betley JR, Schulz-Trieglaff OB, Smith GP, Peacock SJ. Köser CU, et al. N Engl J Med. 2012 Jun 14;366(24):2267-75. doi: 10.1056/NEJMoa1109910. N Engl J Med. 2012. PMID: 22693998 Free PMC article.
Rapid whole-genome sequencing for investigation of a suspected tuberculosis outbreak.
Török ME, Reuter S, Bryant J, Köser CU, Stinchcombe SV, Nazareth B, Ellington MJ, Bentley SD, Smith GP, Parkhill J, Peacock SJ. Török ME, et al. Among authors: koser cu. J Clin Microbiol. 2013 Feb;51(2):611-4. doi: 10.1128/JCM.02279-12. Epub 2012 Nov 21. J Clin Microbiol. 2013. PMID: 23175259 Free PMC article.
Rapid bacterial whole-genome sequencing to enhance diagnostic and public health microbiology.
Reuter S, Ellington MJ, Cartwright EJ, Köser CU, Török ME, Gouliouris T, Harris SR, Brown NM, Holden MT, Quail M, Parkhill J, Smith GP, Bentley SD, Peacock SJ. Reuter S, et al. Among authors: koser cu. JAMA Intern Med. 2013 Aug 12;173(15):1397-404. doi: 10.1001/jamainternmed.2013.7734. JAMA Intern Med. 2013. PMID: 23857503 Free PMC article.
Whole-genome sequencing for rapid susceptibility testing of M. tuberculosis.
Köser CU, Bryant JM, Becq J, Török ME, Ellington MJ, Marti-Renom MA, Carmichael AJ, Parkhill J, Smith GP, Peacock SJ. Köser CU, et al. N Engl J Med. 2013 Jul 18;369(3):290-2. doi: 10.1056/NEJMc1215305. N Engl J Med. 2013. PMID: 23863072 Free PMC article. No abstract available.
Rapid single-colony whole-genome sequencing of bacterial pathogens.
Köser CU, Fraser LJ, Ioannou A, Becq J, Ellington MJ, Holden MT, Reuter S, Török ME, Bentley SD, Parkhill J, Gormley NA, Smith GP, Peacock SJ. Köser CU, et al. J Antimicrob Chemother. 2014 May;69(5):1275-81. doi: 10.1093/jac/dkt494. Epub 2013 Dec 25. J Antimicrob Chemother. 2014. PMID: 24370932 Free PMC article.
New methods for identifying infectious diseases.
Greatorex J, Ellington MJ, Köser CU, Rolfe KJ, Curran MD. Greatorex J, et al. Among authors: koser cu. Br Med Bull. 2014 Dec;112(1):27-35. doi: 10.1093/bmb/ldu027. Epub 2014 Oct 1. Br Med Bull. 2014. PMID: 25274572 Review.
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