Wang X - Search Results

1

PGA: an R/Bioconductor package for identification of novel peptides using a customized database derived from RNA-Seq.

Wen B, Xu S, Zhou R, Zhang B, Wang X, Liu X, Xu X, Liu S. Wen B, et al. Among authors: wang x. BMC Bioinformatics. 2016 Jun 17;17(1):244. doi: 10.1186/s12859-016-1133-3. BMC Bioinformatics. 2016. PMID: 27316337 Free PMC article.

2

customProDB: an R package to generate customized protein databases from RNA-Seq data for proteomics search.

Wang X, Zhang B. Wang X, et al. Bioinformatics. 2013 Dec 15;29(24):3235-7. doi: 10.1093/bioinformatics/btt543. Epub 2013 Sep 20. Bioinformatics. 2013. PMID: 24058055 Free PMC article.

3

Integrating genomic, transcriptomic, and interactome data to improve Peptide and protein identification in shotgun proteomics.

Wang X, Zhang B. Wang X, et al. J Proteome Res. 2014 Jun 6;13(6):2715-23. doi: 10.1021/pr500194t. Epub 2014 May 12. J Proteome Res. 2014. PMID: 24792918 Free PMC article. Review.

4

Leveraging the complementary nature of RNA-Seq and shotgun proteomics data.

Wang X, Liu Q, Zhang B. Wang X, et al. Proteomics. 2014 Dec;14(23-24):2676-87. doi: 10.1002/pmic.201400184. Epub 2014 Nov 17. Proteomics. 2014. PMID: 25266668 Free PMC article.

5

Identification of HPV integration and gene mutation in HeLa cell line by integrated analysis of RNA-Seq and MS/MS data.

Sun H, Chen C, Lian B, Zhang M, Wang X, Zhang B, Li Y, Yang P, Xie L. Sun H, et al. Among authors: wang x. J Proteome Res. 2015 Apr 3;14(4):1678-86. doi: 10.1021/pr500944c. Epub 2015 Mar 10. J Proteome Res. 2015. PMID: 25698088

6

Protein identification using customized protein sequence databases derived from RNA-Seq data.

Wang X, Slebos RJ, Wang D, Halvey PJ, Tabb DL, Liebler DC, Zhang B. Wang X, et al. Among authors: wang d. J Proteome Res. 2012 Feb 3;11(2):1009-17. doi: 10.1021/pr200766z. Epub 2011 Dec 14. J Proteome Res. 2012. PMID: 22103967 Free PMC article.

7

Proteomic analysis of colon and rectal carcinoma using standard and customized databases.

Slebos RJ, Wang X, Wang X, Zhang B, Tabb DL, Liebler DC. Slebos RJ, et al. Among authors: wang x. Sci Data. 2015 Jun 23;2:150022. doi: 10.1038/sdata.2015.22. eCollection 2015. Sci Data. 2015. PMID: 26110064 Free PMC article.

8

Integrating mRNA and Protein Sequencing Enables the Detection and Quantitative Profiling of Natural Protein Sequence Variants of Populus trichocarpa.

Abraham PE, Wang X, Ranjan P, Nookaew I, Zhang B, Tuskan GA, Hettich RL. Abraham PE, et al. Among authors: wang x. J Proteome Res. 2015 Dec 4;14(12):5318-26. doi: 10.1021/acs.jproteome.5b00823. Epub 2015 Oct 30. J Proteome Res. 2015. PMID: 26483142

9

proBAMsuite, a Bioinformatics Framework for Genome-Based Representation and Analysis of Proteomics Data.

Wang X, Slebos RJ, Chambers MC, Tabb DL, Liebler DC, Zhang B. Wang X, et al. Mol Cell Proteomics. 2016 Mar;15(3):1164-75. doi: 10.1074/mcp.M115.052860. Epub 2015 Dec 11. Mol Cell Proteomics. 2016. PMID: 26657539 Free PMC article.

10

PepQuery enables fast, accurate, and convenient proteomic validation of novel genomic alterations.

Wen B, Wang X, Zhang B. Wen B, et al. Among authors: wang x. Genome Res. 2019 Mar;29(3):485-493. doi: 10.1101/gr.235028.118. Epub 2019 Jan 4. Genome Res. 2019. PMID: 30610011 Free PMC article.

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