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Enrichr: a comprehensive gene set enrichment analysis web server 2016 update.
Nucleic Acids Res. 2016 Jul 8;44(W1):W90-7. doi: 10.1093/nar/gkw377. Epub 2016 May 3.
Nucleic Acids Res. 2016.
PMID: 27141961
Free PMC article.
GEO2Enrichr: browser extension and server app to extract gene sets from GEO and analyze them for biological functions.
Gundersen GW, Jones MR, Rouillard AD, Kou Y, Monteiro CD, Feldmann AS, Hu KS, Ma'ayan A.
Gundersen GW, et al.
Bioinformatics. 2015 Sep 15;31(18):3060-2. doi: 10.1093/bioinformatics/btv297. Epub 2015 May 13.
Bioinformatics. 2015.
PMID: 25971742
Free PMC article.
Item in Clipboard
GEN3VA: aggregation and analysis of gene expression signatures from related studies.
Gundersen GW, Jagodnik KM, Woodland H, Fernandez NF, Sani K, Dohlman AB, Ung PM, Monteiro CD, Schlessinger A, Ma'ayan A.
Gundersen GW, et al.
BMC Bioinformatics. 2016 Nov 15;17(1):461. doi: 10.1186/s12859-016-1321-1.
BMC Bioinformatics. 2016.
PMID: 27846806
Free PMC article.
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eXpression2Kinases (X2K) Web: linking expression signatures to upstream cell signaling networks.
Clarke DJB, Kuleshov MV, Schilder BM, Torre D, Duffy ME, Keenan AB, Lachmann A, Feldmann AS, Gundersen GW, Silverstein MC, Wang Z, Ma'ayan A.
Clarke DJB, et al. Among authors: gundersen gw.
Nucleic Acids Res. 2018 Jul 2;46(W1):W171-W179. doi: 10.1093/nar/gky458.
Nucleic Acids Res. 2018.
PMID: 29800326
Free PMC article.
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The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins.
Rouillard AD, Gundersen GW, Fernandez NF, Wang Z, Monteiro CD, McDermott MG, Ma'ayan A.
Rouillard AD, et al. Among authors: gundersen gw.
Database (Oxford). 2016 Jul 3;2016:baw100. doi: 10.1093/database/baw100. Print 2016.
Database (Oxford). 2016.
PMID: 27374120
Free PMC article.
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Extraction and analysis of signatures from the Gene Expression Omnibus by the crowd.
Wang Z, Monteiro CD, Jagodnik KM, Fernandez NF, Gundersen GW, Rouillard AD, Jenkins SL, Feldmann AS, Hu KS, McDermott MG, Duan Q, Clark NR, Jones MR, Kou Y, Goff T, Woodland H, Amaral FMR, Szeto GL, Fuchs O, Schüssler-Fiorenza Rose SM, Sharma S, Schwartz U, Bausela XB, Szymkiewicz M, Maroulis V, Salykin A, Barra CM, Kruth CD, Bongio NJ, Mathur V, Todoric RD, Rubin UE, Malatras A, Fulp CT, Galindo JA, Motiejunaite R, Jüschke C, Dishuck PC, Lahl K, Jafari M, Aibar S, Zaravinos A, Steenhuizen LH, Allison LR, Gamallo P, de Andres Segura F, Dae Devlin T, Pérez-García V, Ma'ayan A.
Wang Z, et al. Among authors: gundersen gw.
Nat Commun. 2016 Sep 26;7:12846. doi: 10.1038/ncomms12846.
Nat Commun. 2016.
PMID: 27667448
Free PMC article.
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Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data.
Fernandez NF, Gundersen GW, Rahman A, Grimes ML, Rikova K, Hornbeck P, Ma'ayan A.
Fernandez NF, et al. Among authors: gundersen gw.
Sci Data. 2017 Oct 10;4:170151. doi: 10.1038/sdata.2017.151.
Sci Data. 2017.
PMID: 28994825
Free PMC article.
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Distinct signals in medial and lateral VTA dopamine neurons modulate fear extinction at different times.
Cai LX, Pizano K, Gundersen GW, Hayes CL, Fleming WT, Holt S, Cox JM, Witten IB.
Cai LX, et al. Among authors: gundersen gw.
Elife. 2020 Jun 10;9:e54936. doi: 10.7554/eLife.54936.
Elife. 2020.
PMID: 32519951
Free PMC article.
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