Aksoy BA - Search Results

1

Pan-Cancer Analysis of Mutation Hotspots in Protein Domains.

Miller ML, Reznik E, Gauthier NP, Aksoy BA, Korkut A, Gao J, Ciriello G, Schultz N, Sander C. Miller ML, et al. Among authors: aksoy ba. Cell Syst. 2015 Sep 23;1(3):197-209. doi: 10.1016/j.cels.2015.08.014. Epub 2015 Sep 23. Cell Syst. 2015. PMID: 27135912 Free PMC article.

2

Using MEMo to discover mutual exclusivity modules in cancer.

Ciriello G, Cerami E, Aksoy BA, Sander C, Schultz N. Ciriello G, et al. Among authors: aksoy ba. Curr Protoc Bioinformatics. 2013 Mar;Chapter 8:8.17.1-8.17.12. doi: 10.1002/0471250953.bi0817s41. Curr Protoc Bioinformatics. 2013. PMID: 23504936 Free PMC article.

3

Integrative analysis of complex cancer genomics and clinical profiles using the cBioPortal.

Gao J, Aksoy BA, Dogrusoz U, Dresdner G, Gross B, Sumer SO, Sun Y, Jacobsen A, Sinha R, Larsson E, Cerami E, Sander C, Schultz N. Gao J, et al. Among authors: aksoy ba. Sci Signal. 2013 Apr 2;6(269):pl1. doi: 10.1126/scisignal.2004088. Sci Signal. 2013. PMID: 23550210 Free PMC article.

4

Emerging landscape of oncogenic signatures across human cancers.

Ciriello G, Miller ML, Aksoy BA, Senbabaoglu Y, Schultz N, Sander C. Ciriello G, et al. Among authors: aksoy ba. Nat Genet. 2013 Oct;45(10):1127-33. doi: 10.1038/ng.2762. Nat Genet. 2013. PMID: 24071851 Free PMC article.

5

Systematic identification of cancer driving signaling pathways based on mutual exclusivity of genomic alterations.

Babur Ö, Gönen M, Aksoy BA, Schultz N, Ciriello G, Sander C, Demir E. Babur Ö, et al. Among authors: aksoy ba. Genome Biol. 2015 Feb 26;16(1):45. doi: 10.1186/s13059-015-0612-6. Genome Biol. 2015. PMID: 25887147 Free PMC article.

6

A Landscape of Metabolic Variation across Tumor Types.

Reznik E, Luna A, Aksoy BA, Liu EM, La K, Ostrovnaya I, Creighton CJ, Hakimi AA, Sander C. Reznik E, et al. Among authors: aksoy ba. Cell Syst. 2018 Mar 28;6(3):301-313.e3. doi: 10.1016/j.cels.2017.12.014. Epub 2018 Jan 27. Cell Syst. 2018. PMID: 29396322 Free PMC article.

7

The cBio cancer genomics portal: an open platform for exploring multidimensional cancer genomics data.

Cerami E, Gao J, Dogrusoz U, Gross BE, Sumer SO, Aksoy BA, Jacobsen A, Byrne CJ, Heuer ML, Larsson E, Antipin Y, Reva B, Goldberg AP, Sander C, Schultz N. Cerami E, et al. Among authors: aksoy ba. Cancer Discov. 2012 May;2(5):401-4. doi: 10.1158/2159-8290.CD-12-0095. Cancer Discov. 2012. PMID: 22588877 Free PMC article.

8

Prediction of individualized therapeutic vulnerabilities in cancer from genomic profiles.

Aksoy BA, Demir E, Babur Ö, Wang W, Jing X, Schultz N, Sander C. Aksoy BA, et al. Bioinformatics. 2014 Jul 15;30(14):2051-9. doi: 10.1093/bioinformatics/btu164. Epub 2014 Mar 24. Bioinformatics. 2014. PMID: 24665131 Free PMC article.

9

Cancer-associated mutations in DICER1 RNase IIIa and IIIb domains exert similar effects on miRNA biogenesis.

Vedanayagam J, Chatila WK, Aksoy BA, Majumdar S, Skanderup AJ, Demir E, Schultz N, Sander C, Lai EC. Vedanayagam J, et al. Among authors: aksoy ba. Nat Commun. 2019 Aug 15;10(1):3682. doi: 10.1038/s41467-019-11610-1. Nat Commun. 2019. PMID: 31417090 Free PMC article.

10

Integrating biological pathways and genomic profiles with ChiBE 2.

Babur Ö, Dogrusoz U, Çakır M, Aksoy BA, Schultz N, Sander C, Demir E. Babur Ö, et al. Among authors: aksoy ba. BMC Genomics. 2014 Aug 3;15(1):642. doi: 10.1186/1471-2164-15-642. BMC Genomics. 2014. PMID: 25086704 Free PMC article.

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