Tomaszkiewicz M - Search Results

1

A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y.

Tomaszkiewicz M, Rangavittal S, Cechova M, Campos Sanchez R, Fescemyer HW, Harris R, Ye D, O'Brien PC, Chikhi R, Ryder OA, Ferguson-Smith MA, Medvedev P, Makova KD. Tomaszkiewicz M, et al. Genome Res. 2016 Apr;26(4):530-40. doi: 10.1101/gr.199448.115. Epub 2016 Mar 2. Genome Res. 2016. PMID: 26934921 Free PMC article.

2

Reverse Transcription Errors and RNA-DNA Differences at Short Tandem Repeats.

Fungtammasan A, Tomaszkiewicz M, Campos-Sánchez R, Eckert KA, DeGiorgio M, Makova KD. Fungtammasan A, et al. Among authors: tomaszkiewicz m. Mol Biol Evol. 2016 Oct;33(10):2744-58. doi: 10.1093/molbev/msw139. Epub 2016 Jul 12. Mol Biol Evol. 2016. PMID: 27413049 Free PMC article.

3

Y and W Chromosome Assemblies: Approaches and Discoveries.

Tomaszkiewicz M, Medvedev P, Makova KD. Tomaszkiewicz M, et al. Trends Genet. 2017 Apr;33(4):266-282. doi: 10.1016/j.tig.2017.01.008. Epub 2017 Feb 22. Trends Genet. 2017. PMID: 28236503 Review.

4

RecoverY: k-mer-based read classification for Y-chromosome-specific sequencing and assembly.

Rangavittal S, Harris RS, Cechova M, Tomaszkiewicz M, Chikhi R, Makova KD, Medvedev P. Rangavittal S, et al. Among authors: tomaszkiewicz m. Bioinformatics. 2018 Apr 1;34(7):1125-1131. doi: 10.1093/bioinformatics/btx771. Bioinformatics. 2018. PMID: 29194476 Free PMC article.

5

High Levels of Copy Number Variation of Ampliconic Genes across Major Human Y Haplogroups.

Ye D, Zaidi AA, Tomaszkiewicz M, Anthony K, Liebowitz C, DeGiorgio M, Shriver MD, Makova KD. Ye D, et al. Among authors: tomaszkiewicz m. Genome Biol Evol. 2018 May 1;10(5):1333-1350. doi: 10.1093/gbe/evy086. Genome Biol Evol. 2018. PMID: 29718380 Free PMC article.

6

Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon.

Sahlin K, Tomaszkiewicz M, Makova KD, Medvedev P. Sahlin K, et al. Among authors: tomaszkiewicz m. Nat Commun. 2018 Nov 2;9(1):4601. doi: 10.1038/s41467-018-06910-x. Nat Commun. 2018. PMID: 30389934 Free PMC article.

7

High Satellite Repeat Turnover in Great Apes Studied with Short- and Long-Read Technologies.

Cechova M, Harris RS, Tomaszkiewicz M, Arbeithuber B, Chiaromonte F, Makova KD. Cechova M, et al. Among authors: tomaszkiewicz m. Mol Biol Evol. 2019 Nov 1;36(11):2415-2431. doi: 10.1093/molbev/msz156. Mol Biol Evol. 2019. PMID: 31273383 Free PMC article.

8

DiscoverY: a classifier for identifying Y chromosome sequences in male assemblies.

Rangavittal S, Stopa N, Tomaszkiewicz M, Sahlin K, Makova KD, Medvedev P. Rangavittal S, et al. Among authors: tomaszkiewicz m. BMC Genomics. 2019 Aug 9;20(1):641. doi: 10.1186/s12864-019-5996-3. BMC Genomics. 2019. PMID: 31399045 Free PMC article.

9

Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes.

Vegesna R, Tomaszkiewicz M, Medvedev P, Makova KD. Vegesna R, et al. Among authors: tomaszkiewicz m. PLoS Genet. 2019 Sep 16;15(9):e1008369. doi: 10.1371/journal.pgen.1008369. eCollection 2019 Sep. PLoS Genet. 2019. PMID: 31525193 Free PMC article.

10

Ampliconic Genes on the Great Ape Y Chromosomes: Rapid Evolution of Copy Number but Conservation of Expression Levels.

Vegesna R, Tomaszkiewicz M, Ryder OA, Campos-Sánchez R, Medvedev P, DeGiorgio M, Makova KD. Vegesna R, et al. Among authors: tomaszkiewicz m. Genome Biol Evol. 2020 Jun 1;12(6):842-859. doi: 10.1093/gbe/evaa088. Genome Biol Evol. 2020. PMID: 32374870 Free PMC article.

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