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A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y.
Tomaszkiewicz M, Rangavittal S, Cechova M, Campos Sanchez R, Fescemyer HW, Harris R, Ye D, O'Brien PC, Chikhi R, Ryder OA, Ferguson-Smith MA, Medvedev P, Makova KD. Tomaszkiewicz M, et al. Among authors: harris r. Genome Res. 2016 Apr;26(4):530-40. doi: 10.1101/gr.199448.115. Epub 2016 Mar 2. Genome Res. 2016. PMID: 26934921 Free PMC article.
Alignathon: a competitive assessment of whole-genome alignment methods.
Earl D, Nguyen N, Hickey G, Harris RS, Fitzgerald S, Beal K, Seledtsov I, Molodtsov V, Raney BJ, Clawson H, Kim J, Kemena C, Chang JM, Erb I, Poliakov A, Hou M, Herrero J, Kent WJ, Solovyev V, Darling AE, Ma J, Notredame C, Brudno M, Dubchak I, Haussler D, Paten B. Earl D, et al. Genome Res. 2014 Dec;24(12):2077-89. doi: 10.1101/gr.174920.114. Epub 2014 Oct 1. Genome Res. 2014. PMID: 25273068 Free PMC article.
AllSome Sequence Bloom Trees.
Sun C, Harris RS, Chikhi R, Medvedev P. Sun C, et al. Among authors: harris rs. J Comput Biol. 2018 May;25(5):467-479. doi: 10.1089/cmb.2017.0258. Epub 2018 Apr 5. J Comput Biol. 2018. PMID: 29620920
Improved representation of sequence bloom trees.
Harris RS, Medvedev P. Harris RS, et al. Bioinformatics. 2020 Feb 1;36(3):721-727. doi: 10.1093/bioinformatics/btz662. Bioinformatics. 2020. PMID: 31504157 Free PMC article.
Dynamic evolution of great ape Y chromosomes.
Cechova M, Vegesna R, Tomaszkiewicz M, Harris RS, Chen D, Rangavittal S, Medvedev P, Makova KD. Cechova M, et al. Among authors: harris rs. Proc Natl Acad Sci U S A. 2020 Oct 20;117(42):26273-26280. doi: 10.1073/pnas.2001749117. Epub 2020 Oct 5. Proc Natl Acad Sci U S A. 2020. PMID: 33020265 Free PMC article.
7,948 results