Gottardo R - Search Results

1

Standardizing Flow Cytometry Immunophenotyping Analysis from the Human ImmunoPhenotyping Consortium.

Finak G, Langweiler M, Jaimes M, Malek M, Taghiyar J, Korin Y, Raddassi K, Devine L, Obermoser G, Pekalski ML, Pontikos N, Diaz A, Heck S, Villanova F, Terrazzini N, Kern F, Qian Y, Stanton R, Wang K, Brandes A, Ramey J, Aghaeepour N, Mosmann T, Scheuermann RH, Reed E, Palucka K, Pascual V, Blomberg BB, Nestle F, Nussenblatt RB, Brinkman RR, Gottardo R, Maecker H, McCoy JP. Finak G, et al. Among authors: gottardo r. Sci Rep. 2016 Feb 10;6:20686. doi: 10.1038/srep20686. Sci Rep. 2016. PMID: 26861911 Free PMC article.

2

Automated gating of flow cytometry data via robust model-based clustering.

Lo K, Brinkman RR, Gottardo R. Lo K, et al. Among authors: gottardo r. Cytometry A. 2008 Apr;73(4):321-32. doi: 10.1002/cyto.a.20531. Cytometry A. 2008. PMID: 18307272 Free article.

3

flowClust: a Bioconductor package for automated gating of flow cytometry data.

Lo K, Hahne F, Brinkman RR, Gottardo R. Lo K, et al. Among authors: gottardo r. BMC Bioinformatics. 2009 May 14;10:145. doi: 10.1186/1471-2105-10-145. BMC Bioinformatics. 2009. PMID: 19442304 Free PMC article.

4

A pipeline for automated analysis of flow cytometry data: preliminary results on lymphoma sub-type diagnosis.

Bashashati A, Lo K, Gottardo R, Gascoyne RD, Weng A, Brinkman R. Bashashati A, et al. Among authors: gottardo r. Annu Int Conf IEEE Eng Med Biol Soc. 2009;2009:4945-8. doi: 10.1109/IEMBS.2009.5332710. Annu Int Conf IEEE Eng Med Biol Soc. 2009. PMID: 19963874

5

Merging mixture components for cell population identification in flow cytometry.

Finak G, Bashashati A, Brinkman R, Gottardo R. Finak G, et al. Among authors: gottardo r. Adv Bioinformatics. 2009;2009:247646. doi: 10.1155/2009/247646. Epub 2009 Nov 12. Adv Bioinformatics. 2009. PMID: 20049161 Free PMC article.

6

Recent bioinformatics advances in the analysis of high throughput flow cytometry data.

Gottardo R, Brinkman RR, Luta G, Wand MP. Gottardo R, et al. Adv Bioinformatics. 2009;2009:461763. doi: 10.1155/2009/461763. Epub 2010 Feb 9. Adv Bioinformatics. 2009. PMID: 20169120 Free PMC article. No abstract available.

7

Optimizing transformations for automated, high throughput analysis of flow cytometry data.

Finak G, Perez JM, Weng A, Gottardo R. Finak G, et al. Among authors: gottardo r. BMC Bioinformatics. 2010 Nov 4;11:546. doi: 10.1186/1471-2105-11-546. BMC Bioinformatics. 2010. PMID: 21050468 Free PMC article.

8

B cells with high side scatter parameter by flow cytometry correlate with inferior survival in diffuse large B-cell lymphoma.

Bashashati A, Johnson NA, Khodabakhshi AH, Whiteside MD, Zare H, Scott DW, Lo K, Gottardo R, Brinkman FS, Connors JM, Slack GW, Gascoyne RD, Weng AP, Brinkman RR. Bashashati A, et al. Among authors: gottardo r. Am J Clin Pathol. 2012 May;137(5):805-14. doi: 10.1309/AJCPGR8BG4JDVOWR. Am J Clin Pathol. 2012. PMID: 22523221 Free PMC article.

9

QUAliFiER: an automated pipeline for quality assessment of gated flow cytometry data.

Finak G, Jiang W, Pardo J, Asare A, Gottardo R. Finak G, et al. Among authors: gottardo r. BMC Bioinformatics. 2012 Sep 28;13:252. doi: 10.1186/1471-2105-13-252. BMC Bioinformatics. 2012. PMID: 23020243 Free PMC article.

10

Data exploration, quality control and testing in single-cell qPCR-based gene expression experiments.

McDavid A, Finak G, Chattopadyay PK, Dominguez M, Lamoreaux L, Ma SS, Roederer M, Gottardo R. McDavid A, et al. Among authors: gottardo r. Bioinformatics. 2013 Feb 15;29(4):461-7. doi: 10.1093/bioinformatics/bts714. Epub 2012 Dec 24. Bioinformatics. 2013. PMID: 23267174 Free PMC article.

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