Nielsen M - Search Results

1

Toxoplasma gondii peptide ligands open the gate of the HLA class I binding groove.

McMurtrey C, Trolle T, Sansom T, Remesh SG, Kaever T, Bardet W, Jackson K, McLeod R, Sette A, Nielsen M, Zajonc DM, Blader IJ, Peters B, Hildebrand W. McMurtrey C, et al. Among authors: nielsen m. Elife. 2016 Jan 29;5:e12556. doi: 10.7554/eLife.12556. Elife. 2016. PMID: 26824387 Free PMC article.

2

NetMHCpan, a method for quantitative predictions of peptide binding to any HLA-A and -B locus protein of known sequence.

Nielsen M, Lundegaard C, Blicher T, Lamberth K, Harndahl M, Justesen S, Røder G, Peters B, Sette A, Lund O, Buus S. Nielsen M, et al. PLoS One. 2007 Aug 29;2(8):e796. doi: 10.1371/journal.pone.0000796. PLoS One. 2007. PMID: 17726526 Free PMC article.

3

Immune epitope database analysis resource (IEDB-AR).

Zhang Q, Wang P, Kim Y, Haste-Andersen P, Beaver J, Bourne PE, Bui HH, Buus S, Frankild S, Greenbaum J, Lund O, Lundegaard C, Nielsen M, Ponomarenko J, Sette A, Zhu Z, Peters B. Zhang Q, et al. Among authors: nielsen m. Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W513-8. doi: 10.1093/nar/gkn254. Epub 2008 May 31. Nucleic Acids Res. 2008. PMID: 18515843 Free PMC article.

4

Quantitative predictions of peptide binding to any HLA-DR molecule of known sequence: NetMHCIIpan.

Nielsen M, Lundegaard C, Blicher T, Peters B, Sette A, Justesen S, Buus S, Lund O. Nielsen M, et al. PLoS Comput Biol. 2008 Jul 4;4(7):e1000107. doi: 10.1371/journal.pcbi.1000107. PLoS Comput Biol. 2008. PMID: 18604266 Free PMC article.

5

Pan-specific MHC class I predictors: a benchmark of HLA class I pan-specific prediction methods.

Zhang H, Lundegaard C, Nielsen M. Zhang H, et al. Among authors: nielsen m. Bioinformatics. 2009 Jan 1;25(1):83-9. doi: 10.1093/bioinformatics/btn579. Epub 2008 Nov 7. Bioinformatics. 2009. PMID: 18996943 Free PMC article.

6

NetMHCpan, a method for MHC class I binding prediction beyond humans.

Hoof I, Peters B, Sidney J, Pedersen LE, Sette A, Lund O, Buus S, Nielsen M. Hoof I, et al. Among authors: nielsen m. Immunogenetics. 2009 Jan;61(1):1-13. doi: 10.1007/s00251-008-0341-z. Epub 2008 Nov 12. Immunogenetics. 2009. PMID: 19002680 Free PMC article.

7

Peptide binding to HLA class I molecules: homogenous, high-throughput screening, and affinity assays.

Harndahl M, Justesen S, Lamberth K, Røder G, Nielsen M, Buus S. Harndahl M, et al. Among authors: nielsen m. J Biomol Screen. 2009 Feb;14(2):173-80. doi: 10.1177/1087057108329453. Epub 2009 Feb 4. J Biomol Screen. 2009. PMID: 19196700

8

NN-align. An artificial neural network-based alignment algorithm for MHC class II peptide binding prediction.

Nielsen M, Lund O. Nielsen M, et al. BMC Bioinformatics. 2009 Sep 18;10:296. doi: 10.1186/1471-2105-10-296. BMC Bioinformatics. 2009. PMID: 19765293 Free PMC article.

9

Systematic characterisation of cellular localisation and expression profiles of proteins containing MHC ligands.

Juncker AS, Larsen MV, Weinhold N, Nielsen M, Brunak S, Lund O. Juncker AS, et al. Among authors: nielsen m. PLoS One. 2009 Oct 14;4(10):e7448. doi: 10.1371/journal.pone.0007448. PLoS One. 2009. PMID: 19826487 Free PMC article.

10

Limitations of Ab initio predictions of peptide binding to MHC class II molecules.

Zhang H, Wang P, Papangelopoulos N, Xu Y, Sette A, Bourne PE, Lund O, Ponomarenko J, Nielsen M, Peters B. Zhang H, et al. Among authors: nielsen m. PLoS One. 2010 Feb 17;5(2):e9272. doi: 10.1371/journal.pone.0009272. PLoS One. 2010. PMID: 20174654 Free PMC article.

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