Qi Y - Search Results

1

CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field.

Lee J, Cheng X, Swails JM, Yeom MS, Eastman PK, Lemkul JA, Wei S, Buckner J, Jeong JC, Qi Y, Jo S, Pande VS, Case DA, Brooks CL 3rd, MacKerell AD Jr, Klauda JB, Im W. Lee J, et al. Among authors: qi y. J Chem Theory Comput. 2016 Jan 12;12(1):405-13. doi: 10.1021/acs.jctc.5b00935. Epub 2015 Dec 3. J Chem Theory Comput. 2016. PMID: 26631602 Free PMC article.

2

Quantification of Drive-Response Relationships Between Residues During Protein Folding.

Qi Y, Im W. Qi Y, et al. J Chem Theory Comput. 2013 Aug 13;9(8):10.1021/ct4002784. doi: 10.1021/ct4002784. J Chem Theory Comput. 2013. PMID: 24223527 Free PMC article.

3

CHARMM-GUI PACE CG Builder for solution, micelle, and bilayer coarse-grained simulations.

Qi Y, Cheng X, Han W, Jo S, Schulten K, Im W. Qi Y, et al. J Chem Inf Model. 2014 Mar 24;54(3):1003-9. doi: 10.1021/ci500007n. Epub 2014 Mar 13. J Chem Inf Model. 2014. PMID: 24624945 Free PMC article.

4

ST-analyzer: a web-based user interface for simulation trajectory analysis.

Jeong JC, Jo S, Wu EL, Qi Y, Monje-Galvan V, Yeom MS, Gorenstein L, Chen F, Klauda JB, Im W. Jeong JC, et al. Among authors: qi y. J Comput Chem. 2014 May 5;35(12):957-63. doi: 10.1002/jcc.23584. Epub 2014 Mar 17. J Comput Chem. 2014. PMID: 24638223 Free article.

5

Preferred orientations of phosphoinositides in bilayers and their implications in protein recognition mechanisms.

Wu EL, Qi Y, Song KC, Klauda JB, Im W. Wu EL, et al. Among authors: qi y. J Phys Chem B. 2014 Apr 24;118(16):4315-25. doi: 10.1021/jp500610t. Epub 2014 Apr 11. J Phys Chem B. 2014. PMID: 24689790

6

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

Wu EL, Cheng X, Jo S, Rui H, Song KC, Dávila-Contreras EM, Qi Y, Lee J, Monje-Galvan V, Venable RM, Klauda JB, Im W. Wu EL, et al. Among authors: qi y. J Comput Chem. 2014 Oct 15;35(27):1997-2004. doi: 10.1002/jcc.23702. Epub 2014 Aug 7. J Comput Chem. 2014. PMID: 25130509 Free PMC article.

7

CHARMM-GUI PDB manipulator for advanced modeling and simulations of proteins containing nonstandard residues.

Jo S, Cheng X, Islam SM, Huang L, Rui H, Zhu A, Lee HS, Qi Y, Han W, Vanommeslaeghe K, MacKerell AD Jr, Roux B, Im W. Jo S, et al. Among authors: qi y. Adv Protein Chem Struct Biol. 2014;96:235-65. doi: 10.1016/bs.apcsb.2014.06.002. Epub 2014 Aug 24. Adv Protein Chem Struct Biol. 2014. PMID: 25443960 Free PMC article. Review.

8

Effects of N-glycosylation on protein conformation and dynamics: Protein Data Bank analysis and molecular dynamics simulation study.

Lee HS, Qi Y, Im W. Lee HS, et al. Among authors: qi y. Sci Rep. 2015 Mar 9;5:8926. doi: 10.1038/srep08926. Sci Rep. 2015. PMID: 25748215 Free PMC article.

9

Solid-State NMR-Restrained Ensemble Dynamics of a Membrane Protein in Explicit Membranes.

Cheng X, Jo S, Qi Y, Marassi FM, Im W. Cheng X, et al. Among authors: qi y. Biophys J. 2015 Apr 21;108(8):1954-62. doi: 10.1016/j.bpj.2015.03.012. Biophys J. 2015. PMID: 25902435 Free PMC article.

10

Preferred conformations of N-glycan core pentasaccharide in solution and in glycoproteins.

Jo S, Qi Y, Im W. Jo S, et al. Among authors: qi y. Glycobiology. 2016 Jan;26(1):19-29. doi: 10.1093/glycob/cwv083. Epub 2015 Sep 24. Glycobiology. 2016. PMID: 26405106 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

10,162 results

Search Page

Filters