Lee J - Search Results

1

CHARMM-GUI Input Generator for NAMD, GROMACS, AMBER, OpenMM, and CHARMM/OpenMM Simulations Using the CHARMM36 Additive Force Field.

Lee J, Cheng X, Swails JM, Yeom MS, Eastman PK, Lemkul JA, Wei S, Buckner J, Jeong JC, Qi Y, Jo S, Pande VS, Case DA, Brooks CL 3rd, MacKerell AD Jr, Klauda JB, Im W. Lee J, et al. J Chem Theory Comput. 2016 Jan 12;12(1):405-13. doi: 10.1021/acs.jctc.5b00935. Epub 2015 Dec 3. J Chem Theory Comput. 2016. PMID: 26631602 Free PMC article.

2

CHARMM-GUI Membrane Builder toward realistic biological membrane simulations.

Wu EL, Cheng X, Jo S, Rui H, Song KC, Dávila-Contreras EM, Qi Y, Lee J, Monje-Galvan V, Venable RM, Klauda JB, Im W. Wu EL, et al. Among authors: lee j. J Comput Chem. 2014 Oct 15;35(27):1997-2004. doi: 10.1002/jcc.23702. Epub 2014 Aug 7. J Comput Chem. 2014. PMID: 25130509 Free PMC article.

3

CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field.

Qi Y, Ingólfsson HI, Cheng X, Lee J, Marrink SJ, Im W. Qi Y, et al. Among authors: lee j. J Chem Theory Comput. 2015 Sep 8;11(9):4486-94. doi: 10.1021/acs.jctc.5b00513. Epub 2015 Aug 27. J Chem Theory Comput. 2015. PMID: 26575938

4

CHARMM-GUI HMMM Builder for Membrane Simulations with the Highly Mobile Membrane-Mimetic Model.

Qi Y, Cheng X, Lee J, Vermaas JV, Pogorelov TV, Tajkhorshid E, Park S, Klauda JB, Im W. Qi Y, et al. Among authors: lee j. Biophys J. 2015 Nov 17;109(10):2012-22. doi: 10.1016/j.bpj.2015.10.008. Biophys J. 2015. PMID: 26588561 Free PMC article.

5

The Structure of a Sugar Transporter of the Glucose EIIC Superfamily Provides Insight into the Elevator Mechanism of Membrane Transport.

McCoy JG, Ren Z, Stanevich V, Lee J, Mitra S, Levin EJ, Poget S, Quick M, Im W, Zhou M. McCoy JG, et al. Among authors: lee j. Structure. 2016 Jun 7;24(6):956-64. doi: 10.1016/j.str.2016.04.003. Epub 2016 May 5. Structure. 2016. PMID: 27161976 Free PMC article.

6

CHARMM-GUI 10 years for biomolecular modeling and simulation.

Jo S, Cheng X, Lee J, Kim S, Park SJ, Patel DS, Beaven AH, Lee KI, Rui H, Park S, Lee HS, Roux B, MacKerell AD Jr, Klauda JB, Qi Y, Im W. Jo S, et al. Among authors: lee hs, lee j, lee ki. J Comput Chem. 2017 Jun 5;38(15):1114-1124. doi: 10.1002/jcc.24660. Epub 2016 Nov 14. J Comput Chem. 2017. PMID: 27862047 Free PMC article. Review.

7

CHARMM-GUI MDFF/xMDFF Utilizer for Molecular Dynamics Flexible Fitting Simulations in Various Environments.

Qi Y, Lee J, Singharoy A, McGreevy R, Schulten K, Im W. Qi Y, et al. Among authors: lee j. J Phys Chem B. 2017 Apr 20;121(15):3718-3723. doi: 10.1021/acs.jpcb.6b10568. Epub 2016 Dec 23. J Phys Chem B. 2017. PMID: 27936734 Free PMC article.

8

CHARMM-GUI ligand reader and modeler for CHARMM force field generation of small molecules.

Kim S, Lee J, Jo S, Brooks CL 3rd, Lee HS, Im W. Kim S, et al. Among authors: lee hs, lee j. J Comput Chem. 2017 Jun 5;38(21):1879-1886. doi: 10.1002/jcc.24829. Epub 2017 May 11. J Comput Chem. 2017. PMID: 28497616 Free PMC article.

9

Molecular Simulation and Biochemical Studies Support an Elevator-type Transport Mechanism in EIIC.

Lee J, Ren Z, Zhou M, Im W. Lee J, et al. Biophys J. 2017 Jun 6;112(11):2249-2252. doi: 10.1016/j.bpj.2017.04.040. Epub 2017 May 13. Biophys J. 2017. PMID: 28506526 Free PMC article.

10

Glycan Reader is improved to recognize most sugar types and chemical modifications in the Protein Data Bank.

Park SJ, Lee J, Patel DS, Ma H, Lee HS, Jo S, Im W. Park SJ, et al. Among authors: lee hs, lee j. Bioinformatics. 2017 Oct 1;33(19):3051-3057. doi: 10.1093/bioinformatics/btx358. Bioinformatics. 2017. PMID: 28582506 Free PMC article.

Save citations to file

Email citations

Send citations to clipboard

Add to Collections

Add to My Bibliography

Create a file for external citation management software

Your saved search

Your RSS Feed

My Custom Filters

Publication date

Text availability

Article attribute

Article type

Article Language

Species

Sex

Age

Other

146,814 results

Search Page

Filters