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PDBFlex: exploring flexibility in protein structures.
Hrabe T, Li Z, Sedova M, Rotkiewicz P, Jaroszewski L, Godzik A. Hrabe T, et al. Among authors: sedova m. Nucleic Acids Res. 2016 Jan 4;44(D1):D423-8. doi: 10.1093/nar/gkv1316. Epub 2015 Nov 28. Nucleic Acids Res. 2016. PMID: 26615193 Free PMC article.
LUD, a new protein domain associated with lactate utilization.
Hwang WC, Bakolitsa C, Punta M, Coggill PC, Bateman A, Axelrod HL, Rawlings ND, Sedova M, Peterson SN, Eberhardt RY, Aravind L, Pascual J, Godzik A. Hwang WC, et al. Among authors: sedova m. BMC Bioinformatics. 2013 Nov 26;14:341. doi: 10.1186/1471-2105-14-341. BMC Bioinformatics. 2013. PMID: 24274019 Free PMC article.
PubServer: literature searches by homology.
Jaroszewski L, Koska L, Sedova M, Godzik A. Jaroszewski L, et al. Among authors: sedova m. Nucleic Acids Res. 2014 Jul;42(Web Server issue):W430-5. doi: 10.1093/nar/gku450. Epub 2014 Jun 23. Nucleic Acids Res. 2014. PMID: 24957597 Free PMC article.
Protael: protein data visualization library for the web.
Sedova M, Jaroszewski L, Godzik A. Sedova M, et al. Bioinformatics. 2016 Feb 15;32(4):602-4. doi: 10.1093/bioinformatics/btv605. Epub 2015 Oct 29. Bioinformatics. 2016. PMID: 26515826 Free PMC article.
The interplay of SARS-CoV-2 evolution and constraints imposed by the structure and functionality of its proteins.
Jaroszewski L, Iyer M, Alisoltani A, Sedova M, Godzik A. Jaroszewski L, et al. Among authors: sedova m. bioRxiv [Preprint]. 2020 Aug 10:2020.08.10.244756. doi: 10.1101/2020.08.10.244756. bioRxiv. 2020. Update in: PLoS Comput Biol. 2021 Jul 8;17(7):e1009147. doi: 10.1371/journal.pcbi.1009147 PMID: 32817947 Free PMC article. Updated. Preprint.
ModFlex: Towards Function Focused Protein Modeling.
Sedova M, Jaroszewski L, Iyer M, Li Z, Godzik A. Sedova M, et al. J Mol Biol. 2021 May 28;433(11):166828. doi: 10.1016/j.jmb.2021.166828. Epub 2021 Jan 23. J Mol Biol. 2021. PMID: 33972023 Free PMC article.
42 results